FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636815_a_at:

>probe:Drosophila_2:1636815_a_at:642:713; Interrogation_Position=2496; Antisense; TTCGATCATTCTTCCCATACTAAAA
>probe:Drosophila_2:1636815_a_at:671:103; Interrogation_Position=2520; Antisense; AGACCGTTTCCATTGACTAGACTGA
>probe:Drosophila_2:1636815_a_at:284:375; Interrogation_Position=2552; Antisense; GAAGATCCCTTAGTCACTCAACAAT
>probe:Drosophila_2:1636815_a_at:168:7; Interrogation_Position=2575; Antisense; ATTGACCAAGCTACCAAGTTACCCA
>probe:Drosophila_2:1636815_a_at:64:709; Interrogation_Position=2593; Antisense; TTACCCACGAAAGTCCACCATAAAG
>probe:Drosophila_2:1636815_a_at:97:167; Interrogation_Position=2637; Antisense; AAATGGCACCCTCTAAGCTTAAATG
>probe:Drosophila_2:1636815_a_at:485:685; Interrogation_Position=2674; Antisense; TATACTTTGGTAATGCCCTTCCACT
>probe:Drosophila_2:1636815_a_at:349:321; Interrogation_Position=2688; Antisense; GCCCTTCCACTACTTGTTGATTGAT
>probe:Drosophila_2:1636815_a_at:508:277; Interrogation_Position=2768; Antisense; CTATGTCATAGAGCCGATTATTATT
>probe:Drosophila_2:1636815_a_at:20:695; Interrogation_Position=2792; Antisense; TTTATCAGTGTCAGTTTTGCGGTAC
>probe:Drosophila_2:1636815_a_at:184:623; Interrogation_Position=2809; Antisense; TGCGGTACACCGTTTTTATATCAAA
>probe:Drosophila_2:1636815_a_at:120:177; Interrogation_Position=2965; Antisense; AAACGCAATGCAACTAAGACGATAT
>probe:Drosophila_2:1636815_a_at:124:411; Interrogation_Position=3044; Antisense; GACGAAGCCAAATTCGGCAAACAGA
>probe:Drosophila_2:1636815_a_at:569:29; Interrogation_Position=3070; Antisense; ATACATTCGATTTGTGCGCTTCTGA

Paste this into a BLAST search page for me
TTCGATCATTCTTCCCATACTAAAAAGACCGTTTCCATTGACTAGACTGAGAAGATCCCTTAGTCACTCAACAATATTGACCAAGCTACCAAGTTACCCATTACCCACGAAAGTCCACCATAAAGAAATGGCACCCTCTAAGCTTAAATGTATACTTTGGTAATGCCCTTCCACTGCCCTTCCACTACTTGTTGATTGATCTATGTCATAGAGCCGATTATTATTTTTATCAGTGTCAGTTTTGCGGTACTGCGGTACACCGTTTTTATATCAAAAAACGCAATGCAACTAAGACGATATGACGAAGCCAAATTCGGCAAACAGAATACATTCGATTTGTGCGCTTCTGA

Full Affymetrix probeset data:

Annotations for 1636815_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720