FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636816_s_at:

>probe:Drosophila_2:1636816_s_at:474:53; Interrogation_Position=2885; Antisense; ATGAATTTCGAGACCCCGGAAGCGT
>probe:Drosophila_2:1636816_s_at:651:723; Interrogation_Position=2909; Antisense; TTGTACGGTGAGAAGCGCTATCGCT
>probe:Drosophila_2:1636816_s_at:13:207; Interrogation_Position=2921; Antisense; AAGCGCTATCGCTCCATTGGCTATA
>probe:Drosophila_2:1636816_s_at:151:631; Interrogation_Position=2933; Antisense; TCCATTGGCTATATGCGTCCGTTGA
>probe:Drosophila_2:1636816_s_at:699:325; Interrogation_Position=2947; Antisense; GCGTCCGTTGAGCATTTGGTCCATG
>probe:Drosophila_2:1636816_s_at:212:345; Interrogation_Position=2958; Antisense; GCATTTGGTCCATGCAGGTGGCATT
>probe:Drosophila_2:1636816_s_at:320:403; Interrogation_Position=2988; Antisense; GACGGCGAGCCCAACGCGACTAAGT
>probe:Drosophila_2:1636816_s_at:16:655; Interrogation_Position=3026; Antisense; TAATCCGAAGTCTACACAACCAAAG
>probe:Drosophila_2:1636816_s_at:441:215; Interrogation_Position=3048; Antisense; AAGATATTTCTAAGCCAGCACAAAG
>probe:Drosophila_2:1636816_s_at:249:89; Interrogation_Position=3088; Antisense; AGTTCGATTCTTCTTTTGAGGCTGA
>probe:Drosophila_2:1636816_s_at:78:99; Interrogation_Position=3151; Antisense; AGATGTTGTCTCTGAAGTGGTTTTC
>probe:Drosophila_2:1636816_s_at:720:285; Interrogation_Position=3205; Antisense; CTGTGGAATCTGTTGGCGCTTACTC
>probe:Drosophila_2:1636816_s_at:426:145; Interrogation_Position=3226; Antisense; ACTCCATGTCTTCTCTAGCTTTAAA
>probe:Drosophila_2:1636816_s_at:18:35; Interrogation_Position=3262; Antisense; ATCAAACTGCTACTCTCTGTTGAAG

Paste this into a BLAST search page for me
ATGAATTTCGAGACCCCGGAAGCGTTTGTACGGTGAGAAGCGCTATCGCTAAGCGCTATCGCTCCATTGGCTATATCCATTGGCTATATGCGTCCGTTGAGCGTCCGTTGAGCATTTGGTCCATGGCATTTGGTCCATGCAGGTGGCATTGACGGCGAGCCCAACGCGACTAAGTTAATCCGAAGTCTACACAACCAAAGAAGATATTTCTAAGCCAGCACAAAGAGTTCGATTCTTCTTTTGAGGCTGAAGATGTTGTCTCTGAAGTGGTTTTCCTGTGGAATCTGTTGGCGCTTACTCACTCCATGTCTTCTCTAGCTTTAAAATCAAACTGCTACTCTCTGTTGAAG

Full Affymetrix probeset data:

Annotations for 1636816_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720