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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636831_s_at:

>probe:Drosophila_2:1636831_s_at:546:661; Interrogation_Position=4756; Antisense; TAACACGGGTGAAGCGCACGGCAAT
>probe:Drosophila_2:1636831_s_at:147:77; Interrogation_Position=4842; Antisense; AGGAGATTGCAACCACTTCAGCGGC
>probe:Drosophila_2:1636831_s_at:273:613; Interrogation_Position=4890; Antisense; TGAACAAATCTCTGGCTAGTGCGCC
>probe:Drosophila_2:1636831_s_at:57:323; Interrogation_Position=4921; Antisense; GCCCACGCAATCATCGTCGAATGTG
>probe:Drosophila_2:1636831_s_at:673:553; Interrogation_Position=4952; Antisense; GGAGCGGCTACCACATCCAAGAAGC
>probe:Drosophila_2:1636831_s_at:233:501; Interrogation_Position=4983; Antisense; GTCGCAAGCGCTCCCAAAAGAAGTA
>probe:Drosophila_2:1636831_s_at:463:151; Interrogation_Position=5034; Antisense; ACATGGACTAGCTACCGTTGGGAGT
>probe:Drosophila_2:1636831_s_at:505:727; Interrogation_Position=5051; Antisense; TTGGGAGTGATCTTCAAGCGCGGAT
>probe:Drosophila_2:1636831_s_at:366:253; Interrogation_Position=5065; Antisense; CAAGCGCGGATCGTCGGATGTCGAA
>probe:Drosophila_2:1636831_s_at:693:549; Interrogation_Position=5134; Antisense; GGACGATGCTTACCAAAACCCTAGC
>probe:Drosophila_2:1636831_s_at:632:127; Interrogation_Position=5174; Antisense; ACCATCTAACCTATCATGCTATCAC
>probe:Drosophila_2:1636831_s_at:345:541; Interrogation_Position=5227; Antisense; GGTTCTCGATTAAGTTTCCTATTCA
>probe:Drosophila_2:1636831_s_at:678:15; Interrogation_Position=5255; Antisense; ATTTTCGCACACACCATTTATTTCT
>probe:Drosophila_2:1636831_s_at:43:159; Interrogation_Position=5266; Antisense; CACCATTTATTTCTCCCAATTCTAT

Paste this into a BLAST search page for me
TAACACGGGTGAAGCGCACGGCAATAGGAGATTGCAACCACTTCAGCGGCTGAACAAATCTCTGGCTAGTGCGCCGCCCACGCAATCATCGTCGAATGTGGGAGCGGCTACCACATCCAAGAAGCGTCGCAAGCGCTCCCAAAAGAAGTAACATGGACTAGCTACCGTTGGGAGTTTGGGAGTGATCTTCAAGCGCGGATCAAGCGCGGATCGTCGGATGTCGAAGGACGATGCTTACCAAAACCCTAGCACCATCTAACCTATCATGCTATCACGGTTCTCGATTAAGTTTCCTATTCAATTTTCGCACACACCATTTATTTCTCACCATTTATTTCTCCCAATTCTAT

Full Affymetrix probeset data:

Annotations for 1636831_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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