FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636888_a_at:

>probe:Drosophila_2:1636888_a_at:73:451; Interrogation_Position=1570; Antisense; GATCCCATGTTCTACGAGACCATCT
>probe:Drosophila_2:1636888_a_at:73:249; Interrogation_Position=1602; Antisense; CAATGGTCCTGGCTATTGGGATCAC
>probe:Drosophila_2:1636888_a_at:707:581; Interrogation_Position=1628; Antisense; TGGCGAATGACTCCAGACCTCAGAA
>probe:Drosophila_2:1636888_a_at:237:131; Interrogation_Position=1644; Antisense; ACCTCAGAACAGCTCCAACATGTGG
>probe:Drosophila_2:1636888_a_at:268:519; Interrogation_Position=1665; Antisense; GTGGATGCCCCTGAAGCATTTTACC
>probe:Drosophila_2:1636888_a_at:434:521; Interrogation_Position=1768; Antisense; GTGGCTGTCTTTGCATATGGACCTG
>probe:Drosophila_2:1636888_a_at:590:129; Interrogation_Position=1788; Antisense; ACCTGGTTCCAGTTTGATTCGCGGG
>probe:Drosophila_2:1636888_a_at:510:351; Interrogation_Position=1821; Antisense; GCAGAACTACTTGGCCTATGTGATG
>probe:Drosophila_2:1636888_a_at:407:681; Interrogation_Position=1837; Antisense; TATGTGATGAGCTACGCGGGCTGTT
>probe:Drosophila_2:1636888_a_at:680:557; Interrogation_Position=1875; Antisense; GGACTTCGATGACTCCTGTGAGGAT
>probe:Drosophila_2:1636888_a_at:617:203; Interrogation_Position=1915; Antisense; AAGGATAGGCCGCTGGACAAACCCA
>probe:Drosophila_2:1636888_a_at:260:727; Interrogation_Position=1978; Antisense; TTGATCCCCATTTTGACTGCTGCCA
>probe:Drosophila_2:1636888_a_at:439:275; Interrogation_Position=2019; Antisense; CGGTCGCGGGCTGTAATTAATGTTG
>probe:Drosophila_2:1636888_a_at:94:103; Interrogation_Position=2076; Antisense; AGACGTACGGATGGCTTCGTTGAAT

Paste this into a BLAST search page for me
GATCCCATGTTCTACGAGACCATCTCAATGGTCCTGGCTATTGGGATCACTGGCGAATGACTCCAGACCTCAGAAACCTCAGAACAGCTCCAACATGTGGGTGGATGCCCCTGAAGCATTTTACCGTGGCTGTCTTTGCATATGGACCTGACCTGGTTCCAGTTTGATTCGCGGGGCAGAACTACTTGGCCTATGTGATGTATGTGATGAGCTACGCGGGCTGTTGGACTTCGATGACTCCTGTGAGGATAAGGATAGGCCGCTGGACAAACCCATTGATCCCCATTTTGACTGCTGCCACGGTCGCGGGCTGTAATTAATGTTGAGACGTACGGATGGCTTCGTTGAAT

Full Affymetrix probeset data:

Annotations for 1636888_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720