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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636928_s_at:

>probe:Drosophila_2:1636928_s_at:325:391; Interrogation_Position=3049; Antisense; GAAACGCGTAGACAAAAACTGGACA
>probe:Drosophila_2:1636928_s_at:426:21; Interrogation_Position=3085; Antisense; ATATGGACGGCTTCATTTCCACTTT
>probe:Drosophila_2:1636928_s_at:234:343; Interrogation_Position=3094; Antisense; GCTTCATTTCCACTTTCCCTACTTA
>probe:Drosophila_2:1636928_s_at:511:213; Interrogation_Position=3135; Antisense; AAGAGGATGATTGTTCGCCCGAAAA
>probe:Drosophila_2:1636928_s_at:651:707; Interrogation_Position=3268; Antisense; TTACCTTATACTTTACTCCCACCAT
>probe:Drosophila_2:1636928_s_at:60:147; Interrogation_Position=3277; Antisense; ACTTTACTCCCACCATTATTGTTGA
>probe:Drosophila_2:1636928_s_at:595:527; Interrogation_Position=3313; Antisense; GGGAAATGTGCGTAACTTCGTCCTC
>probe:Drosophila_2:1636928_s_at:565:227; Interrogation_Position=3317; Antisense; AATGTGCGTAACTTCGTCCTCTTTA
>probe:Drosophila_2:1636928_s_at:16:245; Interrogation_Position=3365; Antisense; AATTATTCAGATGCAAGTACCTTTG
>probe:Drosophila_2:1636928_s_at:311:445; Interrogation_Position=3374; Antisense; GATGCAAGTACCTTTGAGAGACATA
>probe:Drosophila_2:1636928_s_at:189:681; Interrogation_Position=3420; Antisense; TATAGGCAATTCTTCAATGTTCAAT
>probe:Drosophila_2:1636928_s_at:654:711; Interrogation_Position=3432; Antisense; TTCAATGTTCAATTGTGCGAAGCAA
>probe:Drosophila_2:1636928_s_at:329:161; Interrogation_Position=3458; Antisense; AAATTGCGCTATTCTTATTCGTTAA
>probe:Drosophila_2:1636928_s_at:213:687; Interrogation_Position=3473; Antisense; TATTCGTTAAGCTAAGTGACAGTAA

Paste this into a BLAST search page for me
GAAACGCGTAGACAAAAACTGGACAATATGGACGGCTTCATTTCCACTTTGCTTCATTTCCACTTTCCCTACTTAAAGAGGATGATTGTTCGCCCGAAAATTACCTTATACTTTACTCCCACCATACTTTACTCCCACCATTATTGTTGAGGGAAATGTGCGTAACTTCGTCCTCAATGTGCGTAACTTCGTCCTCTTTAAATTATTCAGATGCAAGTACCTTTGGATGCAAGTACCTTTGAGAGACATATATAGGCAATTCTTCAATGTTCAATTTCAATGTTCAATTGTGCGAAGCAAAAATTGCGCTATTCTTATTCGTTAATATTCGTTAAGCTAAGTGACAGTAA

Full Affymetrix probeset data:

Annotations for 1636928_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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