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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636960_a_at:

>probe:Drosophila_2:1636960_a_at:146:337; Interrogation_Position=3437; Antisense; GCTGCGACACGACCCTTGAAATTGA
>probe:Drosophila_2:1636960_a_at:359:613; Interrogation_Position=3459; Antisense; TGAATTAGCCCTTTGTTTTTCGCTT
>probe:Drosophila_2:1636960_a_at:729:677; Interrogation_Position=3534; Antisense; TAGTGAAGGGACTAGCCTGGAGCAA
>probe:Drosophila_2:1636960_a_at:78:675; Interrogation_Position=3546; Antisense; TAGCCTGGAGCAAAAGCTGTTCAAT
>probe:Drosophila_2:1636960_a_at:654:331; Interrogation_Position=3561; Antisense; GCTGTTCAATCATCTCCTTAGCATG
>probe:Drosophila_2:1636960_a_at:580:379; Interrogation_Position=3594; Antisense; GAACCGAATCCATAGTTAACTGGTA
>probe:Drosophila_2:1636960_a_at:460:473; Interrogation_Position=3608; Antisense; GTTAACTGGTAGACATTCGCGTTTT
>probe:Drosophila_2:1636960_a_at:440:401; Interrogation_Position=3619; Antisense; GACATTCGCGTTTTAATTCTCCGTG
>probe:Drosophila_2:1636960_a_at:262:247; Interrogation_Position=3633; Antisense; AATTCTCCGTGTTTTCAGCGATTTT
>probe:Drosophila_2:1636960_a_at:432:649; Interrogation_Position=3647; Antisense; TCAGCGATTTTCGATGGACTCCGCG
>probe:Drosophila_2:1636960_a_at:461:313; Interrogation_Position=3671; Antisense; GCCATCCCGTGTCTTGTGGCAAGAC
>probe:Drosophila_2:1636960_a_at:177:221; Interrogation_Position=3720; Antisense; AAGTGTAATGTTTCGCTATAGTGTT
>probe:Drosophila_2:1636960_a_at:500:537; Interrogation_Position=3781; Antisense; GGTCATACACACATTCGGCAAACAT
>probe:Drosophila_2:1636960_a_at:318:23; Interrogation_Position=3906; Antisense; ATATGCCATTCTGACAATGTGTTCA

Paste this into a BLAST search page for me
GCTGCGACACGACCCTTGAAATTGATGAATTAGCCCTTTGTTTTTCGCTTTAGTGAAGGGACTAGCCTGGAGCAATAGCCTGGAGCAAAAGCTGTTCAATGCTGTTCAATCATCTCCTTAGCATGGAACCGAATCCATAGTTAACTGGTAGTTAACTGGTAGACATTCGCGTTTTGACATTCGCGTTTTAATTCTCCGTGAATTCTCCGTGTTTTCAGCGATTTTTCAGCGATTTTCGATGGACTCCGCGGCCATCCCGTGTCTTGTGGCAAGACAAGTGTAATGTTTCGCTATAGTGTTGGTCATACACACATTCGGCAAACATATATGCCATTCTGACAATGTGTTCA

Full Affymetrix probeset data:

Annotations for 1636960_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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