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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636989_a_at:

>probe:Drosophila_2:1636989_a_at:423:241; Interrogation_Position=3655; Antisense; AATACCTGCAGTGGCTCAATTGTTG
>probe:Drosophila_2:1636989_a_at:29:247; Interrogation_Position=3672; Antisense; AATTGTTGGCATCACGCCGGGCATA
>probe:Drosophila_2:1636989_a_at:160:569; Interrogation_Position=3691; Antisense; GGCATAGCTTTATCCACCAGTGGCG
>probe:Drosophila_2:1636989_a_at:292:507; Interrogation_Position=3766; Antisense; GTGCGAGAACTAGCAGCGGGTCTAA
>probe:Drosophila_2:1636989_a_at:632:661; Interrogation_Position=3809; Antisense; TAAAGCCGCCCGTTATGCCAAGAAC
>probe:Drosophila_2:1636989_a_at:27:109; Interrogation_Position=3829; Antisense; AGAACCCTGCTGAACGCGACTAGTG
>probe:Drosophila_2:1636989_a_at:456:71; Interrogation_Position=3876; Antisense; AGGCTCCACCTCCAATAGTGTATCA
>probe:Drosophila_2:1636989_a_at:654:679; Interrogation_Position=3891; Antisense; TAGTGTATCAGTCAGCTCATCCACG
>probe:Drosophila_2:1636989_a_at:486:381; Interrogation_Position=3915; Antisense; GAACGCCAACACATCGATGACAGTA
>probe:Drosophila_2:1636989_a_at:549:481; Interrogation_Position=3937; Antisense; GTATTAAACCAGAGCCAGACACGAT
>probe:Drosophila_2:1636989_a_at:254:455; Interrogation_Position=3959; Antisense; GATCACGGATCGTAAGCTCGACCAG
>probe:Drosophila_2:1636989_a_at:720:347; Interrogation_Position=4065; Antisense; GCATGCCAAGGCCTGTGCCAATTTA
>probe:Drosophila_2:1636989_a_at:637:197; Interrogation_Position=4096; Antisense; AACGAAATCCTCAGTATGCGCAACG
>probe:Drosophila_2:1636989_a_at:216:453; Interrogation_Position=4188; Antisense; GATCTCCACGCTATTCGAGGTTTGA

Paste this into a BLAST search page for me
AATACCTGCAGTGGCTCAATTGTTGAATTGTTGGCATCACGCCGGGCATAGGCATAGCTTTATCCACCAGTGGCGGTGCGAGAACTAGCAGCGGGTCTAATAAAGCCGCCCGTTATGCCAAGAACAGAACCCTGCTGAACGCGACTAGTGAGGCTCCACCTCCAATAGTGTATCATAGTGTATCAGTCAGCTCATCCACGGAACGCCAACACATCGATGACAGTAGTATTAAACCAGAGCCAGACACGATGATCACGGATCGTAAGCTCGACCAGGCATGCCAAGGCCTGTGCCAATTTAAACGAAATCCTCAGTATGCGCAACGGATCTCCACGCTATTCGAGGTTTGA

Full Affymetrix probeset data:

Annotations for 1636989_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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