FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636991_s_at:

>probe:Drosophila_2:1636991_s_at:444:565; Interrogation_Position=1814; Antisense; GGCAAAGCACCCTGCACTTGGAGGG
>probe:Drosophila_2:1636991_s_at:441:261; Interrogation_Position=1854; Antisense; CACCGCCCAGGTGGACATGAACAAG
>probe:Drosophila_2:1636991_s_at:335:185; Interrogation_Position=1885; Antisense; AACAAGGATAACCAACCCGCCAGAT
>probe:Drosophila_2:1636991_s_at:336:679; Interrogation_Position=1912; Antisense; TAGGCGCTCTAGTCGGTGTCTGGTC
>probe:Drosophila_2:1636991_s_at:246:599; Interrogation_Position=1928; Antisense; TGTCTGGTCGCAGTACGAGTGTCTT
>probe:Drosophila_2:1636991_s_at:660:429; Interrogation_Position=1944; Antisense; GAGTGTCTTCGGGTGACTTCGTAAT
>probe:Drosophila_2:1636991_s_at:181:487; Interrogation_Position=1979; Antisense; GTAGCTAGTAACTGGGACCTGCCCA
>probe:Drosophila_2:1636991_s_at:19:45; Interrogation_Position=2022; Antisense; ATCCCTATAACGATACCCAATCCGA
>probe:Drosophila_2:1636991_s_at:46:683; Interrogation_Position=2053; Antisense; TATGTTAATCCCATTCCCCGCGGAG
>probe:Drosophila_2:1636991_s_at:76:303; Interrogation_Position=2069; Antisense; CCCGCGGAGGAATGTGCTTCTATGT
>probe:Drosophila_2:1636991_s_at:268:87; Interrogation_Position=2221; Antisense; AGTCGTGATCGCTTAAAGGCTCAAA
>probe:Drosophila_2:1636991_s_at:289:227; Interrogation_Position=2236; Antisense; AAGGCTCAAAGCTTCGACTTAGACA
>probe:Drosophila_2:1636991_s_at:388:237; Interrogation_Position=2283; Antisense; AATCGATCCTGTTCTTGCTTTCTTA
>probe:Drosophila_2:1636991_s_at:269:645; Interrogation_Position=2295; Antisense; TCTTGCTTTCTTAAACCCTCTTGAA

Paste this into a BLAST search page for me
GGCAAAGCACCCTGCACTTGGAGGGCACCGCCCAGGTGGACATGAACAAGAACAAGGATAACCAACCCGCCAGATTAGGCGCTCTAGTCGGTGTCTGGTCTGTCTGGTCGCAGTACGAGTGTCTTGAGTGTCTTCGGGTGACTTCGTAATGTAGCTAGTAACTGGGACCTGCCCAATCCCTATAACGATACCCAATCCGATATGTTAATCCCATTCCCCGCGGAGCCCGCGGAGGAATGTGCTTCTATGTAGTCGTGATCGCTTAAAGGCTCAAAAAGGCTCAAAGCTTCGACTTAGACAAATCGATCCTGTTCTTGCTTTCTTATCTTGCTTTCTTAAACCCTCTTGAA

Full Affymetrix probeset data:

Annotations for 1636991_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720