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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636994_at:

>probe:Drosophila_2:1636994_at:80:139; Interrogation_Position=4247; Antisense; ACGTATCAACGTTCAAACACTTTGA
>probe:Drosophila_2:1636994_at:333:21; Interrogation_Position=4277; Antisense; ATTTGGAATATTTTCCCGTGACTGA
>probe:Drosophila_2:1636994_at:152:699; Interrogation_Position=4287; Antisense; TTTTCCCGTGACTGATGAACTAAAA
>probe:Drosophila_2:1636994_at:262:177; Interrogation_Position=4315; Antisense; AAACGCAACATTAATTTCATGCTTG
>probe:Drosophila_2:1636994_at:169:711; Interrogation_Position=4330; Antisense; TTCATGCTTGTATTCTTTACTTTTA
>probe:Drosophila_2:1636994_at:57:217; Interrogation_Position=4359; Antisense; AAGTTTTAGAACTCTCTGCCCTCCT
>probe:Drosophila_2:1636994_at:147:703; Interrogation_Position=4384; Antisense; TTAATCACCGCGTTTAAGTTTTGTG
>probe:Drosophila_2:1636994_at:328:217; Interrogation_Position=4399; Antisense; AAGTTTTGTGTGTTGGTGCATATTT
>probe:Drosophila_2:1636994_at:645:21; Interrogation_Position=4418; Antisense; ATATTTGTGTTGCTTTCTCCAGGGT
>probe:Drosophila_2:1636994_at:127:711; Interrogation_Position=4432; Antisense; TTCTCCAGGGTTTCACTAACGCATA
>probe:Drosophila_2:1636994_at:304:479; Interrogation_Position=4441; Antisense; GTTTCACTAACGCATAGAACTTTCG
>probe:Drosophila_2:1636994_at:315:105; Interrogation_Position=4456; Antisense; AGAACTTTCGTTTACAATGTGGATT
>probe:Drosophila_2:1636994_at:617:241; Interrogation_Position=4522; Antisense; AATATATACCATGTGGACGTGGATG
>probe:Drosophila_2:1636994_at:206:473; Interrogation_Position=4617; Antisense; GTTAAAGCAAAGTGGCTGCCCTTAA

Paste this into a BLAST search page for me
ACGTATCAACGTTCAAACACTTTGAATTTGGAATATTTTCCCGTGACTGATTTTCCCGTGACTGATGAACTAAAAAAACGCAACATTAATTTCATGCTTGTTCATGCTTGTATTCTTTACTTTTAAAGTTTTAGAACTCTCTGCCCTCCTTTAATCACCGCGTTTAAGTTTTGTGAAGTTTTGTGTGTTGGTGCATATTTATATTTGTGTTGCTTTCTCCAGGGTTTCTCCAGGGTTTCACTAACGCATAGTTTCACTAACGCATAGAACTTTCGAGAACTTTCGTTTACAATGTGGATTAATATATACCATGTGGACGTGGATGGTTAAAGCAAAGTGGCTGCCCTTAA

Full Affymetrix probeset data:

Annotations for 1636994_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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