FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636999_a_at:

>probe:Drosophila_2:1636999_a_at:682:285; Interrogation_Position=1385; Antisense; CTGTGCCTGATCAATTGCGTGTCCA
>probe:Drosophila_2:1636999_a_at:390:451; Interrogation_Position=1489; Antisense; GATCGATTATCTGATGTGGCACCAC
>probe:Drosophila_2:1636999_a_at:547:441; Interrogation_Position=1501; Antisense; GATGTGGCACCACTTCGGACGCAAT
>probe:Drosophila_2:1636999_a_at:621:75; Interrogation_Position=1530; Antisense; AGGAGCGCAATCACGACCTGGTGCA
>probe:Drosophila_2:1636999_a_at:163:443; Interrogation_Position=1555; Antisense; GATGTACAAGCAGCACTTCGAGCGT
>probe:Drosophila_2:1636999_a_at:32:637; Interrogation_Position=1572; Antisense; TCGAGCGTGGCGTTAATCCGACCAA
>probe:Drosophila_2:1636999_a_at:691:237; Interrogation_Position=1595; Antisense; AATCTTGCCATGCTGATCAACGCGT
>probe:Drosophila_2:1636999_a_at:150:33; Interrogation_Position=1610; Antisense; ATCAACGCGTACATCCATCGTAACG
>probe:Drosophila_2:1636999_a_at:214:43; Interrogation_Position=1626; Antisense; ATCGTAACGACCTGCATCTGGCACG
>probe:Drosophila_2:1636999_a_at:673:309; Interrogation_Position=1689; Antisense; CCACGCTGAAGATGCCGGTGATCAA
>probe:Drosophila_2:1636999_a_at:526:453; Interrogation_Position=1708; Antisense; GATCAATATCACAGGTTCGCTCTCG
>probe:Drosophila_2:1636999_a_at:492:501; Interrogation_Position=1739; Antisense; GTCGACGACACGGTGACCTTCAATG
>probe:Drosophila_2:1636999_a_at:691:709; Interrogation_Position=1757; Antisense; TTCAATGGCCGTCTAGATCCTACAA
>probe:Drosophila_2:1636999_a_at:552:215; Interrogation_Position=1796; Antisense; AAGATTTCCGATTGCGCTTTGGTGC

Paste this into a BLAST search page for me
CTGTGCCTGATCAATTGCGTGTCCAGATCGATTATCTGATGTGGCACCACGATGTGGCACCACTTCGGACGCAATAGGAGCGCAATCACGACCTGGTGCAGATGTACAAGCAGCACTTCGAGCGTTCGAGCGTGGCGTTAATCCGACCAAAATCTTGCCATGCTGATCAACGCGTATCAACGCGTACATCCATCGTAACGATCGTAACGACCTGCATCTGGCACGCCACGCTGAAGATGCCGGTGATCAAGATCAATATCACAGGTTCGCTCTCGGTCGACGACACGGTGACCTTCAATGTTCAATGGCCGTCTAGATCCTACAAAAGATTTCCGATTGCGCTTTGGTGC

Full Affymetrix probeset data:

Annotations for 1636999_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720