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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637015_s_at:

>probe:Drosophila_2:1637015_s_at:627:489; Interrogation_Position=1009; Antisense; GTACTATCCGTACACTATTGGATTT
>probe:Drosophila_2:1637015_s_at:143:5; Interrogation_Position=1025; Antisense; ATTGGATTTGCCAGCCTATGTTCTT
>probe:Drosophila_2:1637015_s_at:74:263; Interrogation_Position=1036; Antisense; CAGCCTATGTTCTTCGATCGATCGT
>probe:Drosophila_2:1637015_s_at:75:275; Interrogation_Position=1047; Antisense; CTTCGATCGATCGTTGGGAAAATCT
>probe:Drosophila_2:1637015_s_at:671:559; Interrogation_Position=1063; Antisense; GGAAAATCTACAAACAAGCCCTTCT
>probe:Drosophila_2:1637015_s_at:429:205; Interrogation_Position=1078; Antisense; AAGCCCTTCTTAATACGTCGATTGT
>probe:Drosophila_2:1637015_s_at:297:15; Interrogation_Position=1109; Antisense; ATTTTAGATCCCCAATTCATTAATA
>probe:Drosophila_2:1637015_s_at:306:725; Interrogation_Position=1162; Antisense; TTGTTTCCTTATACGTTGGCTCTTG
>probe:Drosophila_2:1637015_s_at:204:509; Interrogation_Position=1223; Antisense; GTGCTAAAGCAGCAGGCAACAGCAA
>probe:Drosophila_2:1637015_s_at:252:359; Interrogation_Position=1238; Antisense; GCAACAGCAACTTAATCGAAAACCA
>probe:Drosophila_2:1637015_s_at:403:705; Interrogation_Position=1378; Antisense; TTAGAAACGAGCGAGACGGCATGCT
>probe:Drosophila_2:1637015_s_at:93:123; Interrogation_Position=1410; Antisense; AGCGAGAGCGCAATAGCTGGCCAAT
>probe:Drosophila_2:1637015_s_at:551:31; Interrogation_Position=1511; Antisense; ATAACCTATAGACAGGCCGCCGAAT
>probe:Drosophila_2:1637015_s_at:456:319; Interrogation_Position=1529; Antisense; GCCGAATTCGCATCCACATGTTATT

Paste this into a BLAST search page for me
GTACTATCCGTACACTATTGGATTTATTGGATTTGCCAGCCTATGTTCTTCAGCCTATGTTCTTCGATCGATCGTCTTCGATCGATCGTTGGGAAAATCTGGAAAATCTACAAACAAGCCCTTCTAAGCCCTTCTTAATACGTCGATTGTATTTTAGATCCCCAATTCATTAATATTGTTTCCTTATACGTTGGCTCTTGGTGCTAAAGCAGCAGGCAACAGCAAGCAACAGCAACTTAATCGAAAACCATTAGAAACGAGCGAGACGGCATGCTAGCGAGAGCGCAATAGCTGGCCAATATAACCTATAGACAGGCCGCCGAATGCCGAATTCGCATCCACATGTTATT

Full Affymetrix probeset data:

Annotations for 1637015_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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