FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637078_a_at:

>probe:Drosophila_2:1637078_a_at:719:235; Interrogation_Position=1197; Antisense; AATCTGAGCAATCTGGGTAATCCCG
>probe:Drosophila_2:1637078_a_at:13:37; Interrogation_Position=1252; Antisense; ATCATCATCAGTCAGCGGCGGCGGC
>probe:Drosophila_2:1637078_a_at:606:331; Interrogation_Position=1275; Antisense; GCGGCAAGTGCCCATCATGTGCACG
>probe:Drosophila_2:1637078_a_at:399:283; Interrogation_Position=1354; Antisense; CTGCGGCGGCCTACAGCATGAAGAC
>probe:Drosophila_2:1637078_a_at:613:613; Interrogation_Position=1372; Antisense; TGAAGACGCCCTGTGGAAGTCCATC
>probe:Drosophila_2:1637078_a_at:200:575; Interrogation_Position=1413; Antisense; GGCGGTCAGGGATCAGTGCCCCATC
>probe:Drosophila_2:1637078_a_at:362:145; Interrogation_Position=1495; Antisense; ACTCGGTCAGCGATATCCTGGCCCA
>probe:Drosophila_2:1637078_a_at:561:343; Interrogation_Position=1582; Antisense; GCATGGGCAGTACGGTATCCCCGCT
>probe:Drosophila_2:1637078_a_at:369:591; Interrogation_Position=1643; Antisense; TGGTCAGCCACTGCTCGACTGCGAG
>probe:Drosophila_2:1637078_a_at:45:89; Interrogation_Position=1684; Antisense; AGTCGCCGTACAACTACTACATGTA
>probe:Drosophila_2:1637078_a_at:441:145; Interrogation_Position=1699; Antisense; ACTACATGTACTTCCAGAACGGCGG
>probe:Drosophila_2:1637078_a_at:161:105; Interrogation_Position=1714; Antisense; AGAACGGCGGAATGCATCACCACCA
>probe:Drosophila_2:1637078_a_at:382:647; Interrogation_Position=1739; Antisense; TCATCACGGCGGAATGATGGCCGCT
>probe:Drosophila_2:1637078_a_at:540:67; Interrogation_Position=1755; Antisense; ATGGCCGCTGGAGCCACGGGCTTAT

Paste this into a BLAST search page for me
AATCTGAGCAATCTGGGTAATCCCGATCATCATCAGTCAGCGGCGGCGGCGCGGCAAGTGCCCATCATGTGCACGCTGCGGCGGCCTACAGCATGAAGACTGAAGACGCCCTGTGGAAGTCCATCGGCGGTCAGGGATCAGTGCCCCATCACTCGGTCAGCGATATCCTGGCCCAGCATGGGCAGTACGGTATCCCCGCTTGGTCAGCCACTGCTCGACTGCGAGAGTCGCCGTACAACTACTACATGTAACTACATGTACTTCCAGAACGGCGGAGAACGGCGGAATGCATCACCACCATCATCACGGCGGAATGATGGCCGCTATGGCCGCTGGAGCCACGGGCTTAT

Full Affymetrix probeset data:

Annotations for 1637078_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720