FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637091_a_at:

>probe:Drosophila_2:1637091_a_at:323:17; Interrogation_Position=1374; Antisense; ATATCGTGGACTGACCTAAGTGCGG
>probe:Drosophila_2:1637091_a_at:703:277; Interrogation_Position=1389; Antisense; CTAAGTGCGGATGCTGTTACGGCGT
>probe:Drosophila_2:1637091_a_at:458:601; Interrogation_Position=1403; Antisense; TGTTACGGCGTTGGTTACCCACATT
>probe:Drosophila_2:1637091_a_at:632:653; Interrogation_Position=1438; Antisense; TAATTCGGCTCAATATCGCTGGCTG
>probe:Drosophila_2:1637091_a_at:280:293; Interrogation_Position=1469; Antisense; CGTTTTGTTTGACTCGCATGTTGCA
>probe:Drosophila_2:1637091_a_at:3:195; Interrogation_Position=1504; Antisense; AACGGTGTCCTCAGTTGTTGGAGCT
>probe:Drosophila_2:1637091_a_at:76:585; Interrogation_Position=1594; Antisense; TGGAATATTTGTCCGTCTCCCGATG
>probe:Drosophila_2:1637091_a_at:56:613; Interrogation_Position=1646; Antisense; TGAACTTAAGAGTATGCCCTCGCTA
>probe:Drosophila_2:1637091_a_at:409:321; Interrogation_Position=1661; Antisense; GCCCTCGCTAACCTATTTAGACATA
>probe:Drosophila_2:1637091_a_at:171:21; Interrogation_Position=1683; Antisense; ATATTTGGGATGCTGTCGGACACTG
>probe:Drosophila_2:1637091_a_at:512:245; Interrogation_Position=1753; Antisense; AATTCATTCACAGTTCGGTATCCCG
>probe:Drosophila_2:1637091_a_at:150:335; Interrogation_Position=1844; Antisense; GCTGCTTCCGTTACCATTTGAATTT
>probe:Drosophila_2:1637091_a_at:6:21; Interrogation_Position=1865; Antisense; ATTTGTTTTGCTGCGTAAGCCACCC
>probe:Drosophila_2:1637091_a_at:284:657; Interrogation_Position=1880; Antisense; TAAGCCACCCGTAACGCAGTTATTT

Paste this into a BLAST search page for me
ATATCGTGGACTGACCTAAGTGCGGCTAAGTGCGGATGCTGTTACGGCGTTGTTACGGCGTTGGTTACCCACATTTAATTCGGCTCAATATCGCTGGCTGCGTTTTGTTTGACTCGCATGTTGCAAACGGTGTCCTCAGTTGTTGGAGCTTGGAATATTTGTCCGTCTCCCGATGTGAACTTAAGAGTATGCCCTCGCTAGCCCTCGCTAACCTATTTAGACATAATATTTGGGATGCTGTCGGACACTGAATTCATTCACAGTTCGGTATCCCGGCTGCTTCCGTTACCATTTGAATTTATTTGTTTTGCTGCGTAAGCCACCCTAAGCCACCCGTAACGCAGTTATTT

Full Affymetrix probeset data:

Annotations for 1637091_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720