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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637092_a_at:

>probe:Drosophila_2:1637092_a_at:213:159; Interrogation_Position=1134; Antisense; ACAAAGGCAAGCCATCCAGCGGCAA
>probe:Drosophila_2:1637092_a_at:602:503; Interrogation_Position=1177; Antisense; GTCCATGGACATCGTTATCTTGAAG
>probe:Drosophila_2:1637092_a_at:650:479; Interrogation_Position=1230; Antisense; GTTTGGACGTGCCATCCACTTCTAA
>probe:Drosophila_2:1637092_a_at:634:659; Interrogation_Position=1252; Antisense; TAACGCTGCGGAGGCCTCGAAAGAA
>probe:Drosophila_2:1637092_a_at:245:205; Interrogation_Position=1277; Antisense; AAGCCTGCGACTGAAAACACCGAGA
>probe:Drosophila_2:1637092_a_at:28:265; Interrogation_Position=1305; Antisense; CAGAAGCTGCTGTCAAGGTTTTTAC
>probe:Drosophila_2:1637092_a_at:702:221; Interrogation_Position=1319; Antisense; AAGGTTTTTACACCGGCTGCCAGAG
>probe:Drosophila_2:1637092_a_at:173:107; Interrogation_Position=1372; Antisense; AGACAAGCAGCCAGCAGGTTCCGCC
>probe:Drosophila_2:1637092_a_at:413:471; Interrogation_Position=1389; Antisense; GTTCCGCCCACGAAACTGCAGAGGA
>probe:Drosophila_2:1637092_a_at:459:313; Interrogation_Position=1415; Antisense; GCCATCAAGGCTGCTCAATTTCGAG
>probe:Drosophila_2:1637092_a_at:448:637; Interrogation_Position=1471; Antisense; TCGACCATCGATTGCCATTTACCAG
>probe:Drosophila_2:1637092_a_at:104:257; Interrogation_Position=1498; Antisense; CAAAGCCCGAATTCGTGCATCAGAT
>probe:Drosophila_2:1637092_a_at:72:509; Interrogation_Position=1512; Antisense; GTGCATCAGATGAGCTGCCCCAAGG
>probe:Drosophila_2:1637092_a_at:553:375; Interrogation_Position=1594; Antisense; GAAGAGGAACAAACGCCCCAATCGG

Paste this into a BLAST search page for me
ACAAAGGCAAGCCATCCAGCGGCAAGTCCATGGACATCGTTATCTTGAAGGTTTGGACGTGCCATCCACTTCTAATAACGCTGCGGAGGCCTCGAAAGAAAAGCCTGCGACTGAAAACACCGAGACAGAAGCTGCTGTCAAGGTTTTTACAAGGTTTTTACACCGGCTGCCAGAGAGACAAGCAGCCAGCAGGTTCCGCCGTTCCGCCCACGAAACTGCAGAGGAGCCATCAAGGCTGCTCAATTTCGAGTCGACCATCGATTGCCATTTACCAGCAAAGCCCGAATTCGTGCATCAGATGTGCATCAGATGAGCTGCCCCAAGGGAAGAGGAACAAACGCCCCAATCGG

Full Affymetrix probeset data:

Annotations for 1637092_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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