FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637155_at:

>probe:Drosophila_2:1637155_at:333:287; Interrogation_Position=1055; Antisense; CTGGCGCCGGTCTGAGTAACTTGGA
>probe:Drosophila_2:1637155_at:118:489; Interrogation_Position=1070; Antisense; GTAACTTGGACATGGGCTTCATCAA
>probe:Drosophila_2:1637155_at:186:345; Interrogation_Position=1097; Antisense; GCATCATCGGAGTGTTCGAGACCAA
>probe:Drosophila_2:1637155_at:476:425; Interrogation_Position=1114; Antisense; GAGACCAAGTATCCGTATGTGCCTA
>probe:Drosophila_2:1637155_at:622:505; Interrogation_Position=1132; Antisense; GTGCCTAACTATATTCTGGTACATG
>probe:Drosophila_2:1637155_at:178:539; Interrogation_Position=1149; Antisense; GGTACATGATTTGCCTTTTCTGCTA
>probe:Drosophila_2:1637155_at:345:277; Interrogation_Position=1163; Antisense; CTTTTCTGCTAGATGCTGCCTTTAA
>probe:Drosophila_2:1637155_at:328:663; Interrogation_Position=1185; Antisense; TAAATTGGTGAAGACCTTCCTGCCC
>probe:Drosophila_2:1637155_at:46:445; Interrogation_Position=1303; Antisense; GATGACTACGTTTACAAATTCGCCT
>probe:Drosophila_2:1637155_at:248:31; Interrogation_Position=803; Antisense; ATAACCTCGCGTGGCGGAAGAGCTT
>probe:Drosophila_2:1637155_at:626:429; Interrogation_Position=830; Antisense; GAGTTTACGACATCACCGAGGCAAA
>probe:Drosophila_2:1637155_at:308:441; Interrogation_Position=877; Antisense; GATGGCTCCATCTATGTGCACAACA
>probe:Drosophila_2:1637155_at:69:81; Interrogation_Position=907; Antisense; AGGGACGGAAAACCGCTGCTGATCC
>probe:Drosophila_2:1637155_at:652:727; Interrogation_Position=986; Antisense; TTGTCTTCTGGATTGAGCGTTTGCA

Paste this into a BLAST search page for me
CTGGCGCCGGTCTGAGTAACTTGGAGTAACTTGGACATGGGCTTCATCAAGCATCATCGGAGTGTTCGAGACCAAGAGACCAAGTATCCGTATGTGCCTAGTGCCTAACTATATTCTGGTACATGGGTACATGATTTGCCTTTTCTGCTACTTTTCTGCTAGATGCTGCCTTTAATAAATTGGTGAAGACCTTCCTGCCCGATGACTACGTTTACAAATTCGCCTATAACCTCGCGTGGCGGAAGAGCTTGAGTTTACGACATCACCGAGGCAAAGATGGCTCCATCTATGTGCACAACAAGGGACGGAAAACCGCTGCTGATCCTTGTCTTCTGGATTGAGCGTTTGCA

Full Affymetrix probeset data:

Annotations for 1637155_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720