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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637174_s_at:

>probe:Drosophila_2:1637174_s_at:167:111; Interrogation_Position=1042; Antisense; AGCAACCCCTTGTCTATAGTCAGGA
>probe:Drosophila_2:1637174_s_at:110:455; Interrogation_Position=1065; Antisense; GATATACGACCCATAAGCTTGGCCA
>probe:Drosophila_2:1637174_s_at:491:343; Interrogation_Position=1081; Antisense; GCTTGGCCACCAGTAAGGACATCAT
>probe:Drosophila_2:1637174_s_at:269:657; Interrogation_Position=1094; Antisense; TAAGGACATCATTATGCCGACCGCA
>probe:Drosophila_2:1637174_s_at:693:625; Interrogation_Position=1108; Antisense; TGCCGACCGCACAGCTTTTTGTAAG
>probe:Drosophila_2:1637174_s_at:569:139; Interrogation_Position=1146; Antisense; ACGTCGATCTCACAAATGCAGCCGG
>probe:Drosophila_2:1637174_s_at:325:561; Interrogation_Position=1169; Antisense; GGAAAAGCGTCTTCGCTACACCGTT
>probe:Drosophila_2:1637174_s_at:636:665; Interrogation_Position=1185; Antisense; TACACCGTTGTCCATCTGAGAGATC
>probe:Drosophila_2:1637174_s_at:39:427; Interrogation_Position=1202; Antisense; GAGAGATCAGAACCAGTGTGCCAGA
>probe:Drosophila_2:1637174_s_at:365:95; Interrogation_Position=1307; Antisense; AGATTCGGGCGGTCCACTTGTCACA
>probe:Drosophila_2:1637174_s_at:211:23; Interrogation_Position=1335; Antisense; ATAGATGGCCGTCTAAAGCTCTACG
>probe:Drosophila_2:1637174_s_at:490:357; Interrogation_Position=1386; Antisense; GCAAACGCCATGTTTCCTGGAATTT
>probe:Drosophila_2:1637174_s_at:506:215; Interrogation_Position=1417; Antisense; AAGTTTCGGCCTATGACGACTGGAT
>probe:Drosophila_2:1637174_s_at:121:553; Interrogation_Position=1457; Antisense; GGAGCTGGTCTAGCCTAATTTTAAA

Paste this into a BLAST search page for me
AGCAACCCCTTGTCTATAGTCAGGAGATATACGACCCATAAGCTTGGCCAGCTTGGCCACCAGTAAGGACATCATTAAGGACATCATTATGCCGACCGCATGCCGACCGCACAGCTTTTTGTAAGACGTCGATCTCACAAATGCAGCCGGGGAAAAGCGTCTTCGCTACACCGTTTACACCGTTGTCCATCTGAGAGATCGAGAGATCAGAACCAGTGTGCCAGAAGATTCGGGCGGTCCACTTGTCACAATAGATGGCCGTCTAAAGCTCTACGGCAAACGCCATGTTTCCTGGAATTTAAGTTTCGGCCTATGACGACTGGATGGAGCTGGTCTAGCCTAATTTTAAA

Full Affymetrix probeset data:

Annotations for 1637174_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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