FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637240_a_at:

>probe:Drosophila_2:1637240_a_at:138:627; Interrogation_Position=1351; Antisense; TGCCGGAGGGTCTGCTAGGAATTTT
>probe:Drosophila_2:1637240_a_at:47:619; Interrogation_Position=1363; Antisense; TGCTAGGAATTTTGCCTCACTCCAT
>probe:Drosophila_2:1637240_a_at:374:629; Interrogation_Position=1383; Antisense; TCCATCCGTGGAATGCTGTGCAACT
>probe:Drosophila_2:1637240_a_at:347:193; Interrogation_Position=1404; Antisense; AACTACGAGAATATTCTGCCCGCCA
>probe:Drosophila_2:1637240_a_at:42:627; Interrogation_Position=1420; Antisense; TGCCCGCCACTCAAAAGTTTGCTCA
>probe:Drosophila_2:1637240_a_at:667:479; Interrogation_Position=1436; Antisense; GTTTGCTCAGTGCATAGCCTGTTCA
>probe:Drosophila_2:1637240_a_at:336:471; Interrogation_Position=1456; Antisense; GTTCAGCGGCCGTCCTAAATGAATA
>probe:Drosophila_2:1637240_a_at:220:529; Interrogation_Position=1490; Antisense; GGGTCATGCTTTCCTGTTTAAAACT
>probe:Drosophila_2:1637240_a_at:190:189; Interrogation_Position=1520; Antisense; AACAGCCAAGTTTCTGGAGGATTTG
>probe:Drosophila_2:1637240_a_at:378:527; Interrogation_Position=1547; Antisense; GGGAATCTCCGAATTCAAGCGGTTA
>probe:Drosophila_2:1637240_a_at:288:365; Interrogation_Position=1602; Antisense; GAATTTGACATGTCCGATAGCGACG
>probe:Drosophila_2:1637240_a_at:147:675; Interrogation_Position=1619; Antisense; TAGCGACGAGGATTAGGTTCCACAA
>probe:Drosophila_2:1637240_a_at:257:581; Interrogation_Position=1702; Antisense; TGGCTTTAATTTTCTGCAGCATTTA
>probe:Drosophila_2:1637240_a_at:459:517; Interrogation_Position=1751; Antisense; GTGTGTACTTCAATGCTTTTATTCT

Paste this into a BLAST search page for me
TGCCGGAGGGTCTGCTAGGAATTTTTGCTAGGAATTTTGCCTCACTCCATTCCATCCGTGGAATGCTGTGCAACTAACTACGAGAATATTCTGCCCGCCATGCCCGCCACTCAAAAGTTTGCTCAGTTTGCTCAGTGCATAGCCTGTTCAGTTCAGCGGCCGTCCTAAATGAATAGGGTCATGCTTTCCTGTTTAAAACTAACAGCCAAGTTTCTGGAGGATTTGGGGAATCTCCGAATTCAAGCGGTTAGAATTTGACATGTCCGATAGCGACGTAGCGACGAGGATTAGGTTCCACAATGGCTTTAATTTTCTGCAGCATTTAGTGTGTACTTCAATGCTTTTATTCT

Full Affymetrix probeset data:

Annotations for 1637240_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720