FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637271_a_at:

>probe:Drosophila_2:1637271_a_at:159:555; Interrogation_Position=1004; Antisense; GGAGCCCAATCTATGTGGCATATTT
>probe:Drosophila_2:1637271_a_at:663:13; Interrogation_Position=1056; Antisense; ATTAGCGCCGTTTTGCTGGTGGACC
>probe:Drosophila_2:1637271_a_at:344:701; Interrogation_Position=1099; Antisense; TTTTGATCCCATCGCTGGCCGGAAT
>probe:Drosophila_2:1637271_a_at:350:497; Interrogation_Position=1147; Antisense; GTCTGCTAAAGTCCTTTGCTTCGCA
>probe:Drosophila_2:1637271_a_at:61:617; Interrogation_Position=1163; Antisense; TGCTTCGCAGGACTTTTTACACAAC
>probe:Drosophila_2:1637271_a_at:177:729; Interrogation_Position=1193; Antisense; TTGGATTGCACTTACCCTAATGGGC
>probe:Drosophila_2:1637271_a_at:583:327; Interrogation_Position=1233; Antisense; GCGTCAGCGGGCATAGTGGCTCTTA
>probe:Drosophila_2:1637271_a_at:248:521; Interrogation_Position=1248; Antisense; GTGGCTCTTACCTTTGTCATTATAG
>probe:Drosophila_2:1637271_a_at:672:703; Interrogation_Position=1267; Antisense; TTATAGTTGAGCTTCTGCCCTTTAA
>probe:Drosophila_2:1637271_a_at:164:643; Interrogation_Position=1309; Antisense; TCTCCATCAGTATGTGCGGACTCAG
>probe:Drosophila_2:1637271_a_at:701:647; Interrogation_Position=1330; Antisense; TCAGTTTATCCGTATTCATTGCCCT
>probe:Drosophila_2:1637271_a_at:474:697; Interrogation_Position=1361; Antisense; TTATCCCGTCCTGATCAACGATTAT
>probe:Drosophila_2:1637271_a_at:615:257; Interrogation_Position=1397; Antisense; CACAATGTTTGTGTCGGCGAGTTTC
>probe:Drosophila_2:1637271_a_at:714:575; Interrogation_Position=1412; Antisense; GGCGAGTTTCTGTCTACTAGGTTTG

Paste this into a BLAST search page for me
GGAGCCCAATCTATGTGGCATATTTATTAGCGCCGTTTTGCTGGTGGACCTTTTGATCCCATCGCTGGCCGGAATGTCTGCTAAAGTCCTTTGCTTCGCATGCTTCGCAGGACTTTTTACACAACTTGGATTGCACTTACCCTAATGGGCGCGTCAGCGGGCATAGTGGCTCTTAGTGGCTCTTACCTTTGTCATTATAGTTATAGTTGAGCTTCTGCCCTTTAATCTCCATCAGTATGTGCGGACTCAGTCAGTTTATCCGTATTCATTGCCCTTTATCCCGTCCTGATCAACGATTATCACAATGTTTGTGTCGGCGAGTTTCGGCGAGTTTCTGTCTACTAGGTTTG

Full Affymetrix probeset data:

Annotations for 1637271_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720