FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637286_a_at:

>probe:Drosophila_2:1637286_a_at:503:613; Interrogation_Position=2619; Antisense; TGAAGGCGTACAACAACCGCGACCG
>probe:Drosophila_2:1637286_a_at:118:413; Interrogation_Position=2639; Antisense; GACCGCTGCTAAATCGTACCTGTAT
>probe:Drosophila_2:1637286_a_at:92:483; Interrogation_Position=2660; Antisense; GTATTTAAGTTCCAGCACGTGACAA
>probe:Drosophila_2:1637286_a_at:357:509; Interrogation_Position=2714; Antisense; GTGCAATTTACGTTCTACTCTTAAC
>probe:Drosophila_2:1637286_a_at:281:449; Interrogation_Position=2762; Antisense; GATCGTATTCGGAGAACACTCTTCT
>probe:Drosophila_2:1637286_a_at:722:155; Interrogation_Position=2777; Antisense; ACACTCTTCTACCTAGTTAACGCTA
>probe:Drosophila_2:1637286_a_at:47:175; Interrogation_Position=2840; Antisense; AAACCACTAAAATGTCGTCGCCCAG
>probe:Drosophila_2:1637286_a_at:500:321; Interrogation_Position=2859; Antisense; GCCCAGAGAGCGCATTTCATAACCT
>probe:Drosophila_2:1637286_a_at:707:105; Interrogation_Position=2889; Antisense; AGAAAGTCTTGCATTCAGCTCCACT
>probe:Drosophila_2:1637286_a_at:221:259; Interrogation_Position=2910; Antisense; CACTCTCTCTATGATCGCTATAAGC
>probe:Drosophila_2:1637286_a_at:584:307; Interrogation_Position=2970; Antisense; CCATACGCGTGGTACATGTGCTAAA
>probe:Drosophila_2:1637286_a_at:432:383; Interrogation_Position=3011; Antisense; GAACGTGTACAATTCTTAGTGCATA
>probe:Drosophila_2:1637286_a_at:644:59; Interrogation_Position=3135; Antisense; ATGTATACCCATAGTGACCCACTGT
>probe:Drosophila_2:1637286_a_at:257:511; Interrogation_Position=3148; Antisense; GTGACCCACTGTACCAGTTAGCTGG

Paste this into a BLAST search page for me
TGAAGGCGTACAACAACCGCGACCGGACCGCTGCTAAATCGTACCTGTATGTATTTAAGTTCCAGCACGTGACAAGTGCAATTTACGTTCTACTCTTAACGATCGTATTCGGAGAACACTCTTCTACACTCTTCTACCTAGTTAACGCTAAAACCACTAAAATGTCGTCGCCCAGGCCCAGAGAGCGCATTTCATAACCTAGAAAGTCTTGCATTCAGCTCCACTCACTCTCTCTATGATCGCTATAAGCCCATACGCGTGGTACATGTGCTAAAGAACGTGTACAATTCTTAGTGCATAATGTATACCCATAGTGACCCACTGTGTGACCCACTGTACCAGTTAGCTGG

Full Affymetrix probeset data:

Annotations for 1637286_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720