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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637299_s_at:

>probe:Drosophila_2:1637299_s_at:561:719; Interrogation_Position=1721; Antisense; TTGCAAAAGGAGCTCGCCAAGGCGA
>probe:Drosophila_2:1637299_s_at:658:69; Interrogation_Position=1740; Antisense; AGGCGAATGCACCTTTGTTTCTGAT
>probe:Drosophila_2:1637299_s_at:1:129; Interrogation_Position=1750; Antisense; ACCTTTGTTTCTGATGAGTGCGGAC
>probe:Drosophila_2:1637299_s_at:409:161; Interrogation_Position=1773; Antisense; ACAAGACTATTGGTGTGATCCTCAA
>probe:Drosophila_2:1637299_s_at:226:689; Interrogation_Position=1810; Antisense; TATTGATTTCCCCACGATAGACTGC
>probe:Drosophila_2:1637299_s_at:290:677; Interrogation_Position=1827; Antisense; TAGACTGCCCCGATGATCTGGAATT
>probe:Drosophila_2:1637299_s_at:363:339; Interrogation_Position=1847; Antisense; GAATTCCTTTTGGAGCAAACTGCCG
>probe:Drosophila_2:1637299_s_at:514:177; Interrogation_Position=1863; Antisense; AAACTGCCGACTACGTTCTGCATTT
>probe:Drosophila_2:1637299_s_at:520:19; Interrogation_Position=1884; Antisense; ATTTGCAGATTTCAGCACCGCTCGT
>probe:Drosophila_2:1637299_s_at:687:431; Interrogation_Position=1910; Antisense; GAGTCCCGCTTGGTACATGGCGATA
>probe:Drosophila_2:1637299_s_at:568:83; Interrogation_Position=1934; Antisense; AGTGGCGAACCAACTGAACTGAGTA
>probe:Drosophila_2:1637299_s_at:557:559; Interrogation_Position=2051; Antisense; GGAAAGTTCACTCTCATGCTAGTAT
>probe:Drosophila_2:1637299_s_at:224:173; Interrogation_Position=2090; Antisense; AAAGCTCTCTAAACTTCCTATTTAT
>probe:Drosophila_2:1637299_s_at:207:673; Interrogation_Position=2125; Antisense; TACGCCCACATTTCATTTCAAACTA

Paste this into a BLAST search page for me
TTGCAAAAGGAGCTCGCCAAGGCGAAGGCGAATGCACCTTTGTTTCTGATACCTTTGTTTCTGATGAGTGCGGACACAAGACTATTGGTGTGATCCTCAATATTGATTTCCCCACGATAGACTGCTAGACTGCCCCGATGATCTGGAATTGAATTCCTTTTGGAGCAAACTGCCGAAACTGCCGACTACGTTCTGCATTTATTTGCAGATTTCAGCACCGCTCGTGAGTCCCGCTTGGTACATGGCGATAAGTGGCGAACCAACTGAACTGAGTAGGAAAGTTCACTCTCATGCTAGTATAAAGCTCTCTAAACTTCCTATTTATTACGCCCACATTTCATTTCAAACTA

Full Affymetrix probeset data:

Annotations for 1637299_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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