FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637312_a_at:

>probe:Drosophila_2:1637312_a_at:452:389; Interrogation_Position=3866; Antisense; GAAACACATGTTTGGAAGCTTAGGA
>probe:Drosophila_2:1637312_a_at:681:411; Interrogation_Position=3938; Antisense; GACCGACCAATTGCAAAGATCTTTT
>probe:Drosophila_2:1637312_a_at:287:81; Interrogation_Position=4002; Antisense; AGGGTTAAGCGCACCGTAACACACG
>probe:Drosophila_2:1637312_a_at:535:135; Interrogation_Position=4030; Antisense; ACGCACACACCTATTTACATACGAA
>probe:Drosophila_2:1637312_a_at:183:135; Interrogation_Position=4050; Antisense; ACGAATCACGATGCATATGTATGTC
>probe:Drosophila_2:1637312_a_at:355:245; Interrogation_Position=4165; Antisense; TACCGAAATGTTGACCGGATACTTT
>probe:Drosophila_2:1637312_a_at:211:149; Interrogation_Position=4185; Antisense; ACTTTGATGAGTAAACCTGTGTTCG
>probe:Drosophila_2:1637312_a_at:361:497; Interrogation_Position=4203; Antisense; GTGTTCGTTAATTTTTAGTGCTGCT
>probe:Drosophila_2:1637312_a_at:631:383; Interrogation_Position=4241; Antisense; GACACTTGTTTGTGCGTAAGACCTA
>probe:Drosophila_2:1637312_a_at:476:29; Interrogation_Position=4297; Antisense; ATAAACACCATACACTCACAGAGCG
>probe:Drosophila_2:1637312_a_at:225:417; Interrogation_Position=4317; Antisense; GAGCGCCAAGCCAATGCAGCTGAGA
>probe:Drosophila_2:1637312_a_at:544:607; Interrogation_Position=4337; Antisense; TGAGATCCATGTACCAGCGTTTGCG
>probe:Drosophila_2:1637312_a_at:605:121; Interrogation_Position=4352; Antisense; AGCGTTTGCGGCTCTGCGCGAAGAA
>probe:Drosophila_2:1637312_a_at:703:321; Interrogation_Position=4369; Antisense; GCGAAGAACTCCACTTTCTACTCTA

Paste this into a BLAST search page for me
GAAACACATGTTTGGAAGCTTAGGAGACCGACCAATTGCAAAGATCTTTTAGGGTTAAGCGCACCGTAACACACGACGCACACACCTATTTACATACGAAACGAATCACGATGCATATGTATGTCTACCGAAATGTTGACCGGATACTTTACTTTGATGAGTAAACCTGTGTTCGGTGTTCGTTAATTTTTAGTGCTGCTGACACTTGTTTGTGCGTAAGACCTAATAAACACCATACACTCACAGAGCGGAGCGCCAAGCCAATGCAGCTGAGATGAGATCCATGTACCAGCGTTTGCGAGCGTTTGCGGCTCTGCGCGAAGAAGCGAAGAACTCCACTTTCTACTCTA

Full Affymetrix probeset data:

Annotations for 1637312_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720