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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637356_a_at:

>probe:Drosophila_2:1637356_a_at:270:727; Interrogation_Position=9373; Antisense; TTGGCTTTCCGTATAGCTGCTCGAA
>probe:Drosophila_2:1637356_a_at:498:171; Interrogation_Position=9413; Antisense; AAAGTCTTCATATGTTGCCACCAGC
>probe:Drosophila_2:1637356_a_at:463:117; Interrogation_Position=9479; Antisense; AGCTCTAGGAAACGCTCAGCCAAGA
>probe:Drosophila_2:1637356_a_at:392:409; Interrogation_Position=9537; Antisense; GACGCTAGTCAGTTCGTTAATCTCA
>probe:Drosophila_2:1637356_a_at:443:189; Interrogation_Position=9566; Antisense; AACAGTGTGTATGCCAGCACCAAGG
>probe:Drosophila_2:1637356_a_at:15:315; Interrogation_Position=9614; Antisense; GACTTCGGGCCCTTTAAAGTCGATG
>probe:Drosophila_2:1637356_a_at:481:445; Interrogation_Position=9635; Antisense; GATGAATTCTTCACCAGCTGTGCAG
>probe:Drosophila_2:1637356_a_at:651:119; Interrogation_Position=9650; Antisense; AGCTGTGCAGAAACCGGCGCTGTGC
>probe:Drosophila_2:1637356_a_at:277:89; Interrogation_Position=9716; Antisense; AGTCTCATCCGTTGCACGAGCGAAA
>probe:Drosophila_2:1637356_a_at:36:609; Interrogation_Position=9770; Antisense; TGAGACTCCTGCTGACGAATTCGTA
>probe:Drosophila_2:1637356_a_at:596:369; Interrogation_Position=9805; Antisense; GAATGAGTCTGAGTACCACCGGAAA
>probe:Drosophila_2:1637356_a_at:488:61; Interrogation_Position=9835; Antisense; ATGTCTTCATCATTAACCACGCGGT
>probe:Drosophila_2:1637356_a_at:335:203; Interrogation_Position=9849; Antisense; AACCACGCGGTGCAGTCAGAGGAAA
>probe:Drosophila_2:1637356_a_at:462:405; Interrogation_Position=9885; Antisense; GACTCCAACAGCAGCGTAGGGCACA

Paste this into a BLAST search page for me
TTGGCTTTCCGTATAGCTGCTCGAAAAAGTCTTCATATGTTGCCACCAGCAGCTCTAGGAAACGCTCAGCCAAGAGACGCTAGTCAGTTCGTTAATCTCAAACAGTGTGTATGCCAGCACCAAGGGACTTCGGGCCCTTTAAAGTCGATGGATGAATTCTTCACCAGCTGTGCAGAGCTGTGCAGAAACCGGCGCTGTGCAGTCTCATCCGTTGCACGAGCGAAATGAGACTCCTGCTGACGAATTCGTAGAATGAGTCTGAGTACCACCGGAAAATGTCTTCATCATTAACCACGCGGTAACCACGCGGTGCAGTCAGAGGAAAGACTCCAACAGCAGCGTAGGGCACA

Full Affymetrix probeset data:

Annotations for 1637356_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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