FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637361_a_at:

>probe:Drosophila_2:1637361_a_at:494:699; Interrogation_Position=3297; Antisense; TTTTTCCACAGCCACCGAAATGACA
>probe:Drosophila_2:1637361_a_at:302:395; Interrogation_Position=3313; Antisense; GAAATGACACCCACCAGTTATAGTT
>probe:Drosophila_2:1637361_a_at:512:15; Interrogation_Position=3342; Antisense; ATTATTATGCTATTGCCAGTGCTAG
>probe:Drosophila_2:1637361_a_at:440:309; Interrogation_Position=3357; Antisense; CCAGTGCTAGGCTTTGTATTTTTCT
>probe:Drosophila_2:1637361_a_at:714:713; Interrogation_Position=3378; Antisense; TTCTATAGCTTTTAATTGATCACAA
>probe:Drosophila_2:1637361_a_at:209:241; Interrogation_Position=3400; Antisense; CAATTGTTTAAATCCCGAAGCACGT
>probe:Drosophila_2:1637361_a_at:593:299; Interrogation_Position=3413; Antisense; CCCGAAGCACGTATGGTTTAGTCCA
>probe:Drosophila_2:1637361_a_at:435:229; Interrogation_Position=3456; Antisense; AATGTAGACGGCCAGTTAACTCCAA
>probe:Drosophila_2:1637361_a_at:537:405; Interrogation_Position=3462; Antisense; GACGGCCAGTTAACTCCAAACATAG
>probe:Drosophila_2:1637361_a_at:342:421; Interrogation_Position=3545; Antisense; GAGCACGGGTTGACGATCGATATAT
>probe:Drosophila_2:1637361_a_at:264:101; Interrogation_Position=3662; Antisense; AGAGAGAGACTGCTATAGTCGAGTT
>probe:Drosophila_2:1637361_a_at:438:35; Interrogation_Position=3695; Antisense; ATCAGATACCTGTTACTCCAGCTGG
>probe:Drosophila_2:1637361_a_at:554:669; Interrogation_Position=3708; Antisense; TACTCCAGCTGGTGTGAATGCGAAC
>probe:Drosophila_2:1637361_a_at:469:245; Interrogation_Position=3799; Antisense; AATTGTTCGGCTTTAGGCCATTAGA

Paste this into a BLAST search page for me
TTTTTCCACAGCCACCGAAATGACAGAAATGACACCCACCAGTTATAGTTATTATTATGCTATTGCCAGTGCTAGCCAGTGCTAGGCTTTGTATTTTTCTTTCTATAGCTTTTAATTGATCACAACAATTGTTTAAATCCCGAAGCACGTCCCGAAGCACGTATGGTTTAGTCCAAATGTAGACGGCCAGTTAACTCCAAGACGGCCAGTTAACTCCAAACATAGGAGCACGGGTTGACGATCGATATATAGAGAGAGACTGCTATAGTCGAGTTATCAGATACCTGTTACTCCAGCTGGTACTCCAGCTGGTGTGAATGCGAACAATTGTTCGGCTTTAGGCCATTAGA

Full Affymetrix probeset data:

Annotations for 1637361_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720