FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637384_a_at:

>probe:Drosophila_2:1637384_a_at:219:561; Interrogation_Position=6351; Antisense; GGAAAAATTCTTAACTCAAGCAATA
>probe:Drosophila_2:1637384_a_at:110:107; Interrogation_Position=6405; Antisense; AGAAGCCATACCAAGTTGTTCGACT
>probe:Drosophila_2:1637384_a_at:328:315; Interrogation_Position=6409; Antisense; GCCATACCAAGTTGTTCGACTATTT
>probe:Drosophila_2:1637384_a_at:567:297; Interrogation_Position=6423; Antisense; TTCGACTATTTTAAAAGGGATTCAG
>probe:Drosophila_2:1637384_a_at:167:241; Interrogation_Position=6496; Antisense; AATACCTACATGTTTATTATAGAGA
>probe:Drosophila_2:1637384_a_at:352:159; Interrogation_Position=6559; Antisense; ACAATGTTCAGGTCAATAACTGCAT
>probe:Drosophila_2:1637384_a_at:11:147; Interrogation_Position=6567; Antisense; CAGGTCAATAACTGCATTTAAAAGG
>probe:Drosophila_2:1637384_a_at:534:135; Interrogation_Position=6632; Antisense; ACGAAATGCTCTTTTTATATACAAC
>probe:Drosophila_2:1637384_a_at:232:1; Interrogation_Position=6693; Antisense; ACATTAAACGAATTGCAAATACCCA
>probe:Drosophila_2:1637384_a_at:455:193; Interrogation_Position=6753; Antisense; AACTCACCAAAGTTGTTGGCACAGC
>probe:Drosophila_2:1637384_a_at:376:567; Interrogation_Position=6770; Antisense; GGCACAGCGGAAAACACACAAACAT
>probe:Drosophila_2:1637384_a_at:89:147; Interrogation_Position=6805; Antisense; ACTAACATAGTTATACCACACAAAA
>probe:Drosophila_2:1637384_a_at:347:211; Interrogation_Position=6833; Antisense; AAGACACGGATCAGTTGTGGAAGAA
>probe:Drosophila_2:1637384_a_at:730:393; Interrogation_Position=6855; Antisense; GAAATAATTGTAGTGCCATTAGAGA

Paste this into a BLAST search page for me
GGAAAAATTCTTAACTCAAGCAATAAGAAGCCATACCAAGTTGTTCGACTGCCATACCAAGTTGTTCGACTATTTTTCGACTATTTTAAAAGGGATTCAGAATACCTACATGTTTATTATAGAGAACAATGTTCAGGTCAATAACTGCATCAGGTCAATAACTGCATTTAAAAGGACGAAATGCTCTTTTTATATACAACACATTAAACGAATTGCAAATACCCAAACTCACCAAAGTTGTTGGCACAGCGGCACAGCGGAAAACACACAAACATACTAACATAGTTATACCACACAAAAAAGACACGGATCAGTTGTGGAAGAAGAAATAATTGTAGTGCCATTAGAGA

Full Affymetrix probeset data:

Annotations for 1637384_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720