FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637385_a_at:

>probe:Drosophila_2:1637385_a_at:425:311; Interrogation_Position=1624; Antisense; GCCATCTTCCAACAGTGCGTAGGTA
>probe:Drosophila_2:1637385_a_at:223:493; Interrogation_Position=1646; Antisense; GTAAGCAGACGAACGCCATCGATCT
>probe:Drosophila_2:1637385_a_at:123:621; Interrogation_Position=1682; Antisense; TGCTCGCCCAAAGGCAAGCGCTTAG
>probe:Drosophila_2:1637385_a_at:665:85; Interrogation_Position=1705; Antisense; AGTGCTTACGGTCAGTGGCTTGCCA
>probe:Drosophila_2:1637385_a_at:725:579; Interrogation_Position=1766; Antisense; TGGCCGCCGGTAGCTCGAAGATGTC
>probe:Drosophila_2:1637385_a_at:696:373; Interrogation_Position=1782; Antisense; GAAGATGTCCCTACAGAGGCTCTTT
>probe:Drosophila_2:1637385_a_at:68:657; Interrogation_Position=1793; Antisense; TACAGAGGCTCTTTTTCGTTACCAG
>probe:Drosophila_2:1637385_a_at:57:659; Interrogation_Position=1866; Antisense; TAAGCGGCAGGTGACTCACGCCACA
>probe:Drosophila_2:1637385_a_at:129:67; Interrogation_Position=1916; Antisense; AGGCCTTTAGGTGCCGTCCTGGAGA
>probe:Drosophila_2:1637385_a_at:123:291; Interrogation_Position=2039; Antisense; CGTGCCTACAACAACTGGAGGGCTT
>probe:Drosophila_2:1637385_a_at:629:549; Interrogation_Position=2055; Antisense; GGAGGGCTTCTAAGGCAGCGACCAA
>probe:Drosophila_2:1637385_a_at:288:605; Interrogation_Position=2092; Antisense; TGATTTTTCCCGTCACAATTTGCAC
>probe:Drosophila_2:1637385_a_at:149:245; Interrogation_Position=2108; Antisense; AATTTGCACAGTTTCATGGATCACC
>probe:Drosophila_2:1637385_a_at:13:65; Interrogation_Position=2123; Antisense; ATGGATCACCATATGCTTACGGAAA

Paste this into a BLAST search page for me
GCCATCTTCCAACAGTGCGTAGGTAGTAAGCAGACGAACGCCATCGATCTTGCTCGCCCAAAGGCAAGCGCTTAGAGTGCTTACGGTCAGTGGCTTGCCATGGCCGCCGGTAGCTCGAAGATGTCGAAGATGTCCCTACAGAGGCTCTTTTACAGAGGCTCTTTTTCGTTACCAGTAAGCGGCAGGTGACTCACGCCACAAGGCCTTTAGGTGCCGTCCTGGAGACGTGCCTACAACAACTGGAGGGCTTGGAGGGCTTCTAAGGCAGCGACCAATGATTTTTCCCGTCACAATTTGCACAATTTGCACAGTTTCATGGATCACCATGGATCACCATATGCTTACGGAAA

Full Affymetrix probeset data:

Annotations for 1637385_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720