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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637387_s_at:

>probe:Drosophila_2:1637387_s_at:95:121; Interrogation_Position=2299; Antisense; AGCTGGGCCAGAAGATCTCCGAATC
>probe:Drosophila_2:1637387_s_at:122:247; Interrogation_Position=2326; Antisense; AATTCGTTTCGGATGACTTCCAGGC
>probe:Drosophila_2:1637387_s_at:661:149; Interrogation_Position=2341; Antisense; ACTTCCAGGCCTCGAGCGAATCGGA
>probe:Drosophila_2:1637387_s_at:298:325; Interrogation_Position=2356; Antisense; GCGAATCGGACTTGGCTGAGATCCA
>probe:Drosophila_2:1637387_s_at:294:609; Interrogation_Position=2372; Antisense; TGAGATCCAAGACGGCATGCGCAAA
>probe:Drosophila_2:1637387_s_at:527:297; Interrogation_Position=2391; Antisense; CGCAAATTGGGCATCGACAGCATGA
>probe:Drosophila_2:1637387_s_at:343:399; Interrogation_Position=2406; Antisense; GACAGCATGACCCAGCAGGCATTAG
>probe:Drosophila_2:1637387_s_at:596:267; Interrogation_Position=2421; Antisense; CAGGCATTAGCTGCGACTGATGAGG
>probe:Drosophila_2:1637387_s_at:334:243; Interrogation_Position=2591; Antisense; AATATCAAACTTGCGCACACGCTCG
>probe:Drosophila_2:1637387_s_at:531:357; Interrogation_Position=2605; Antisense; GCACACGCTCGACTAACAACGATTG
>probe:Drosophila_2:1637387_s_at:464:1; Interrogation_Position=2626; Antisense; ATTGGGAGGAGTACGCCGATTTAAT
>probe:Drosophila_2:1637387_s_at:623:485; Interrogation_Position=2691; Antisense; GTAGTTTCTTCTAAGTTGGCTCTAA
>probe:Drosophila_2:1637387_s_at:212:667; Interrogation_Position=2731; Antisense; TACTTTATCTTTCTTTCCATTCCTT
>probe:Drosophila_2:1637387_s_at:601:249; Interrogation_Position=2758; Antisense; CAACCTTGTTTCCTCCTTAATTGAT

Paste this into a BLAST search page for me
AGCTGGGCCAGAAGATCTCCGAATCAATTCGTTTCGGATGACTTCCAGGCACTTCCAGGCCTCGAGCGAATCGGAGCGAATCGGACTTGGCTGAGATCCATGAGATCCAAGACGGCATGCGCAAACGCAAATTGGGCATCGACAGCATGAGACAGCATGACCCAGCAGGCATTAGCAGGCATTAGCTGCGACTGATGAGGAATATCAAACTTGCGCACACGCTCGGCACACGCTCGACTAACAACGATTGATTGGGAGGAGTACGCCGATTTAATGTAGTTTCTTCTAAGTTGGCTCTAATACTTTATCTTTCTTTCCATTCCTTCAACCTTGTTTCCTCCTTAATTGAT

Full Affymetrix probeset data:

Annotations for 1637387_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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