FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637397_a_at:

>probe:Drosophila_2:1637397_a_at:453:137; Interrogation_Position=3780; Antisense; ACGACGTTGCCAGTGAGAGTTCAGA
>probe:Drosophila_2:1637397_a_at:541:257; Interrogation_Position=3821; Antisense; CACTTTCTGAAGTCGGTCCTACATT
>probe:Drosophila_2:1637397_a_at:510:357; Interrogation_Position=3858; Antisense; GCAACAACACGCAAACGCCAGGAGT
>probe:Drosophila_2:1637397_a_at:483:533; Interrogation_Position=3884; Antisense; GGTGTAAGCCATGCCACCGGAGCAA
>probe:Drosophila_2:1637397_a_at:540:399; Interrogation_Position=3914; Antisense; GACAGACAAAAGACATCCACACCAG
>probe:Drosophila_2:1637397_a_at:238:43; Interrogation_Position=3943; Antisense; ATCGTTCCTCTCCATTCCAGAGAAG
>probe:Drosophila_2:1637397_a_at:165:111; Interrogation_Position=3963; Antisense; AGAAGGCCGGGTCCATGAGTAACAC
>probe:Drosophila_2:1637397_a_at:147:429; Interrogation_Position=3979; Antisense; GAGTAACACCGGCTCTCAACTGTTC
>probe:Drosophila_2:1637397_a_at:250:101; Interrogation_Position=4011; Antisense; AGAGTCGCATCTCCCTGGTTAACTA
>probe:Drosophila_2:1637397_a_at:286:629; Interrogation_Position=4048; Antisense; TCCACCCATTCCTTTTGAACAACAA
>probe:Drosophila_2:1637397_a_at:324:143; Interrogation_Position=4094; Antisense; ACTCGCCAATCCTCAGGTCAAATAG
>probe:Drosophila_2:1637397_a_at:663:531; Interrogation_Position=4124; Antisense; GGTGTCAGGACAACGCATCGAAAGT
>probe:Drosophila_2:1637397_a_at:18:87; Interrogation_Position=4146; Antisense; AGTCGCCCCGAAAATGATCGCCGAA
>probe:Drosophila_2:1637397_a_at:334:449; Interrogation_Position=4161; Antisense; GATCGCCGAACTTTTAATTCGTTTG

Paste this into a BLAST search page for me
ACGACGTTGCCAGTGAGAGTTCAGACACTTTCTGAAGTCGGTCCTACATTGCAACAACACGCAAACGCCAGGAGTGGTGTAAGCCATGCCACCGGAGCAAGACAGACAAAAGACATCCACACCAGATCGTTCCTCTCCATTCCAGAGAAGAGAAGGCCGGGTCCATGAGTAACACGAGTAACACCGGCTCTCAACTGTTCAGAGTCGCATCTCCCTGGTTAACTATCCACCCATTCCTTTTGAACAACAAACTCGCCAATCCTCAGGTCAAATAGGGTGTCAGGACAACGCATCGAAAGTAGTCGCCCCGAAAATGATCGCCGAAGATCGCCGAACTTTTAATTCGTTTG

Full Affymetrix probeset data:

Annotations for 1637397_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720