FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637398_a_at:

>probe:Drosophila_2:1637398_a_at:123:523; Interrogation_Position=3140; Antisense; GGGTTGCAAGAGAACGACGGCCAAA
>probe:Drosophila_2:1637398_a_at:558:453; Interrogation_Position=3188; Antisense; GATCATGGAGCCCTTCAAGTCCAAA
>probe:Drosophila_2:1637398_a_at:548:33; Interrogation_Position=3259; Antisense; ATCAATCCCTTGACGAGTGTCGCGA
>probe:Drosophila_2:1637398_a_at:177:85; Interrogation_Position=3274; Antisense; AGTGTCGCGATCTCTTTTTGGAGAC
>probe:Drosophila_2:1637398_a_at:610:701; Interrogation_Position=3289; Antisense; TTTTGGAGACCATGCGCTTCTACCA
>probe:Drosophila_2:1637398_a_at:255:431; Interrogation_Position=3372; Antisense; GAGTACTGGACGAATTTCACCAATG
>probe:Drosophila_2:1637398_a_at:365:377; Interrogation_Position=3458; Antisense; GAAGCAGGCCCAAATCGAATCGCGT
>probe:Drosophila_2:1637398_a_at:672:501; Interrogation_Position=3481; Antisense; GTCGCAACGTATCCACCAAGGTGGA
>probe:Drosophila_2:1637398_a_at:455:217; Interrogation_Position=3507; Antisense; AAGTCCGGACGGATTTCGCTGAAGG
>probe:Drosophila_2:1637398_a_at:321:619; Interrogation_Position=3597; Antisense; TGCTTTTTATTACACCATTGCTCAG
>probe:Drosophila_2:1637398_a_at:160:7; Interrogation_Position=3613; Antisense; ATTGCTCAGCAAACTTCTCGTTACA
>probe:Drosophila_2:1637398_a_at:188:547; Interrogation_Position=3639; Antisense; GGATGTAGTCTCCACTAATTGTTAA
>probe:Drosophila_2:1637398_a_at:408:663; Interrogation_Position=3678; Antisense; TAAACTCCTTAAATGCAGGCGCTGT
>probe:Drosophila_2:1637398_a_at:405:269; Interrogation_Position=3693; Antisense; CAGGCGCTGTGGCTCTACAAATAAA

Paste this into a BLAST search page for me
GGGTTGCAAGAGAACGACGGCCAAAGATCATGGAGCCCTTCAAGTCCAAAATCAATCCCTTGACGAGTGTCGCGAAGTGTCGCGATCTCTTTTTGGAGACTTTTGGAGACCATGCGCTTCTACCAGAGTACTGGACGAATTTCACCAATGGAAGCAGGCCCAAATCGAATCGCGTGTCGCAACGTATCCACCAAGGTGGAAAGTCCGGACGGATTTCGCTGAAGGTGCTTTTTATTACACCATTGCTCAGATTGCTCAGCAAACTTCTCGTTACAGGATGTAGTCTCCACTAATTGTTAATAAACTCCTTAAATGCAGGCGCTGTCAGGCGCTGTGGCTCTACAAATAAA

Full Affymetrix probeset data:

Annotations for 1637398_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720