FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637420_a_at:

>probe:Drosophila_2:1637420_a_at:36:223; Interrogation_Position=3430; Antisense; AAGGGCACCGTTTGCCAGAGCGAGA
>probe:Drosophila_2:1637420_a_at:415:655; Interrogation_Position=3513; Antisense; TAAGGTCAGCCGGAGCTCTAACATC
>probe:Drosophila_2:1637420_a_at:18:231; Interrogation_Position=3568; Antisense; AATGTGGCGCCCGATAAGCAGCGGA
>probe:Drosophila_2:1637420_a_at:239:79; Interrogation_Position=3611; Antisense; AGGATAGCAGCATCTACGGCGCCAG
>probe:Drosophila_2:1637420_a_at:255:279; Interrogation_Position=3652; Antisense; CTCGAGGGCGAGACGGCAATTTTGC
>probe:Drosophila_2:1637420_a_at:643:565; Interrogation_Position=3666; Antisense; GGCAATTTTGCCCATCTTCCGGAAA
>probe:Drosophila_2:1637420_a_at:408:713; Interrogation_Position=3682; Antisense; TTCCGGAAACTCCTCACCGAGAAGA
>probe:Drosophila_2:1637420_a_at:142:41; Interrogation_Position=3772; Antisense; ATCGTCGAGTACTTGTAGGCGGCGC
>probe:Drosophila_2:1637420_a_at:109:71; Interrogation_Position=3788; Antisense; AGGCGGCGCGAGTCATATGCATTAT
>probe:Drosophila_2:1637420_a_at:351:617; Interrogation_Position=3805; Antisense; TGCATTATGCCGTAGTTAAACTCCT
>probe:Drosophila_2:1637420_a_at:526:629; Interrogation_Position=3826; Antisense; TCCTATTGTTAGATCCAGTTGCAGT
>probe:Drosophila_2:1637420_a_at:651:643; Interrogation_Position=3861; Antisense; TCTTTGTTTTCTTTGGAGTTACGCA
>probe:Drosophila_2:1637420_a_at:602:429; Interrogation_Position=3876; Antisense; GAGTTACGCATCTACATACATACCC
>probe:Drosophila_2:1637420_a_at:671:611; Interrogation_Position=3903; Antisense; TGAAGCAGGACACACACCATTTAGT

Paste this into a BLAST search page for me
AAGGGCACCGTTTGCCAGAGCGAGATAAGGTCAGCCGGAGCTCTAACATCAATGTGGCGCCCGATAAGCAGCGGAAGGATAGCAGCATCTACGGCGCCAGCTCGAGGGCGAGACGGCAATTTTGCGGCAATTTTGCCCATCTTCCGGAAATTCCGGAAACTCCTCACCGAGAAGAATCGTCGAGTACTTGTAGGCGGCGCAGGCGGCGCGAGTCATATGCATTATTGCATTATGCCGTAGTTAAACTCCTTCCTATTGTTAGATCCAGTTGCAGTTCTTTGTTTTCTTTGGAGTTACGCAGAGTTACGCATCTACATACATACCCTGAAGCAGGACACACACCATTTAGT

Full Affymetrix probeset data:

Annotations for 1637420_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720