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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637444_s_at:

>probe:Drosophila_2:1637444_s_at:583:621; Interrogation_Position=2741; Antisense; TGCGAACAGGGCAATCAATTCCGAT
>probe:Drosophila_2:1637444_s_at:641:245; Interrogation_Position=2757; Antisense; AATTCCGATTGCTCTACGATCTGGA
>probe:Drosophila_2:1637444_s_at:276:341; Interrogation_Position=2813; Antisense; GCTACGACGATGTACGGCGCTGGAA
>probe:Drosophila_2:1637444_s_at:586:649; Interrogation_Position=2871; Antisense; TCAAACGCCTGACGGATGCGGGTTT
>probe:Drosophila_2:1637444_s_at:684:445; Interrogation_Position=2885; Antisense; GATGCGGGTTTTGGCAATCTACCTA
>probe:Drosophila_2:1637444_s_at:263:239; Interrogation_Position=2900; Antisense; AATCTACCTATCTGCATGTCCAAAG
>probe:Drosophila_2:1637444_s_at:399:75; Interrogation_Position=2970; Antisense; AGGGCTTCACCCTGGACGTTGAGGA
>probe:Drosophila_2:1637444_s_at:312:407; Interrogation_Position=2993; Antisense; GACGTATATGTTTCAGCCGGAGCCG
>probe:Drosophila_2:1637444_s_at:442:633; Interrogation_Position=3027; Antisense; TCGCCATGTGCGGTGAGGTCACCAA
>probe:Drosophila_2:1637444_s_at:326:435; Interrogation_Position=3041; Antisense; GAGGTCACCAAAATGCCGGGTCTTC
>probe:Drosophila_2:1637444_s_at:434:321; Interrogation_Position=3072; Antisense; GCCCGGCGATCTACGATATCGATCT
>probe:Drosophila_2:1637444_s_at:151:433; Interrogation_Position=3119; Antisense; GAGGGCCTATTTTAGACGGCAACCT
>probe:Drosophila_2:1637444_s_at:660:463; Interrogation_Position=3157; Antisense; GATTCCTAATAACTTTCAACGCCTT
>probe:Drosophila_2:1637444_s_at:596:681; Interrogation_Position=3170; Antisense; TTTCAACGCCTTTTCACATCTAATT

Paste this into a BLAST search page for me
TGCGAACAGGGCAATCAATTCCGATAATTCCGATTGCTCTACGATCTGGAGCTACGACGATGTACGGCGCTGGAATCAAACGCCTGACGGATGCGGGTTTGATGCGGGTTTTGGCAATCTACCTAAATCTACCTATCTGCATGTCCAAAGAGGGCTTCACCCTGGACGTTGAGGAGACGTATATGTTTCAGCCGGAGCCGTCGCCATGTGCGGTGAGGTCACCAAGAGGTCACCAAAATGCCGGGTCTTCGCCCGGCGATCTACGATATCGATCTGAGGGCCTATTTTAGACGGCAACCTGATTCCTAATAACTTTCAACGCCTTTTTCAACGCCTTTTCACATCTAATT

Full Affymetrix probeset data:

Annotations for 1637444_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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