FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637449_at:

>probe:Drosophila_2:1637449_at:373:579; Interrogation_Position=121; Antisense; GGCCTTTGGCTGTCGTCTTTTGTGT
>probe:Drosophila_2:1637449_at:564:231; Interrogation_Position=159; Antisense; AATGACACTCGGCTGGTACATTTCC
>probe:Drosophila_2:1637449_at:451:573; Interrogation_Position=169; Antisense; GGCTGGTACATTTCCGGTTCTAAAT
>probe:Drosophila_2:1637449_at:199:553; Interrogation_Position=18; Antisense; GGAGCAACAGGAGTCATTCATCTAT
>probe:Drosophila_2:1637449_at:597:539; Interrogation_Position=184; Antisense; GGTTCTAAATGCCTCCGATCTAAAC
>probe:Drosophila_2:1637449_at:463:243; Interrogation_Position=218; Antisense; AATTTCTCCTTGTCGTGTGCCATTA
>probe:Drosophila_2:1637449_at:136:597; Interrogation_Position=233; Antisense; TGTGCCATTATCTGCGCTCAAGTGC
>probe:Drosophila_2:1637449_at:516:219; Interrogation_Position=252; Antisense; AAGTGCATCTCTCGGTTGTCAGGCT
>probe:Drosophila_2:1637449_at:341:213; Interrogation_Position=279; Antisense; AAGAGCGTTTGCCATGTCCATTCGA
>probe:Drosophila_2:1637449_at:263:437; Interrogation_Position=302; Antisense; GAGGCGCGTTCGCAATTAGTTTGCA
>probe:Drosophila_2:1637449_at:322:615; Interrogation_Position=323; Antisense; TGCAATTGGGCCGTGAGACAAGCTT
>probe:Drosophila_2:1637449_at:107:13; Interrogation_Position=33; Antisense; ATTCATCTATGCCACATCGTGTGCG
>probe:Drosophila_2:1637449_at:185:515; Interrogation_Position=51; Antisense; GTGTGCGAATTTATATGCCCCTTTT
>probe:Drosophila_2:1637449_at:97:25; Interrogation_Position=63; Antisense; ATATGCCCCTTTTGCGGCGAAACGG

Paste this into a BLAST search page for me
GGCCTTTGGCTGTCGTCTTTTGTGTAATGACACTCGGCTGGTACATTTCCGGCTGGTACATTTCCGGTTCTAAATGGAGCAACAGGAGTCATTCATCTATGGTTCTAAATGCCTCCGATCTAAACAATTTCTCCTTGTCGTGTGCCATTATGTGCCATTATCTGCGCTCAAGTGCAAGTGCATCTCTCGGTTGTCAGGCTAAGAGCGTTTGCCATGTCCATTCGAGAGGCGCGTTCGCAATTAGTTTGCATGCAATTGGGCCGTGAGACAAGCTTATTCATCTATGCCACATCGTGTGCGGTGTGCGAATTTATATGCCCCTTTTATATGCCCCTTTTGCGGCGAAACGG

Full Affymetrix probeset data:

Annotations for 1637449_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720