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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637510_s_at:

>probe:Drosophila_2:1637510_s_at:296:381; Interrogation_Position=1588; Antisense; GAACCCAGAGCGTTACATCATTCAG
>probe:Drosophila_2:1637510_s_at:130:13; Interrogation_Position=1607; Antisense; ATTCAGATCTGGACCACTGGTGTAG
>probe:Drosophila_2:1637510_s_at:223:193; Interrogation_Position=1682; Antisense; AACTACGATGCCCTGTACTTGGATT
>probe:Drosophila_2:1637510_s_at:451:677; Interrogation_Position=1783; Antisense; TAGTTTGAAATCCATTGCCGGCGAC
>probe:Drosophila_2:1637510_s_at:593:317; Interrogation_Position=1799; Antisense; GCCGGCGACTACGAGCATCATGTAT
>probe:Drosophila_2:1637510_s_at:465:415; Interrogation_Position=1836; Antisense; GAGCCATTTGGTCAGAGCAGATCGA
>probe:Drosophila_2:1637510_s_at:706:97; Interrogation_Position=1854; Antisense; AGATCGACGAGCACACACTGGACAA
>probe:Drosophila_2:1637510_s_at:596:85; Interrogation_Position=1898; Antisense; AGTGCCCTGGCCGAACGACTTTGGT
>probe:Drosophila_2:1637510_s_at:491:403; Interrogation_Position=1914; Antisense; GACTTTGGTCAAATCCTGCCGAAGG
>probe:Drosophila_2:1637510_s_at:468:123; Interrogation_Position=2016; Antisense; AGCCGCAGTGGTGCCTGCAAAACGA
>probe:Drosophila_2:1637510_s_at:536:175; Interrogation_Position=2035; Antisense; AAACGAGCACGAGTGTCCCATTGAC
>probe:Drosophila_2:1637510_s_at:450:725; Interrogation_Position=2090; Antisense; TTGATCGTCCTGTTGCTTCTCACAA
>probe:Drosophila_2:1637510_s_at:503:159; Interrogation_Position=2111; Antisense; ACAACGCTCTCTGCCTGAAAATAAA
>probe:Drosophila_2:1637510_s_at:6:219; Interrogation_Position=2134; Antisense; AAGTACAGCTCAAAGGTGGCCTTAC

Paste this into a BLAST search page for me
GAACCCAGAGCGTTACATCATTCAGATTCAGATCTGGACCACTGGTGTAGAACTACGATGCCCTGTACTTGGATTTAGTTTGAAATCCATTGCCGGCGACGCCGGCGACTACGAGCATCATGTATGAGCCATTTGGTCAGAGCAGATCGAAGATCGACGAGCACACACTGGACAAAGTGCCCTGGCCGAACGACTTTGGTGACTTTGGTCAAATCCTGCCGAAGGAGCCGCAGTGGTGCCTGCAAAACGAAAACGAGCACGAGTGTCCCATTGACTTGATCGTCCTGTTGCTTCTCACAAACAACGCTCTCTGCCTGAAAATAAAAAGTACAGCTCAAAGGTGGCCTTAC

Full Affymetrix probeset data:

Annotations for 1637510_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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