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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637552_s_at:

>probe:Drosophila_2:1637552_s_at:146:389; Interrogation_Position=2474; Antisense; GAAAAGCCGGTCTCCGAAGAGACGA
>probe:Drosophila_2:1637552_s_at:665:497; Interrogation_Position=2483; Antisense; GTCTCCGAAGAGACGAGCGCATAGG
>probe:Drosophila_2:1637552_s_at:243:105; Interrogation_Position=2493; Antisense; AGACGAGCGCATAGGACGCGAGAAA
>probe:Drosophila_2:1637552_s_at:21:447; Interrogation_Position=2587; Antisense; GATGCAAAAGCAGCGCGGCAACCAT
>probe:Drosophila_2:1637552_s_at:290:357; Interrogation_Position=2604; Antisense; GCAACCATTGCCAAAAGAAACAGCG
>probe:Drosophila_2:1637552_s_at:506:213; Interrogation_Position=2642; Antisense; AAGAGCAGTCGAAAATATTTACAAA
>probe:Drosophila_2:1637552_s_at:433:385; Interrogation_Position=2730; Antisense; GAACTTGAGGAAATCTGCTGAGAAA
>probe:Drosophila_2:1637552_s_at:260:145; Interrogation_Position=2761; Antisense; ACTATCGCAGATTAGAGTTAAGTTA
>probe:Drosophila_2:1637552_s_at:49:357; Interrogation_Position=2798; Antisense; GCAAAAGTAAAAAACCACTGCATGG
>probe:Drosophila_2:1637552_s_at:641:175; Interrogation_Position=2826; Antisense; AAACCGATGGCAAGAGCGATGTAAA
>probe:Drosophila_2:1637552_s_at:546:379; Interrogation_Position=2871; Antisense; GAAACTATTTTGCTAATTTTGAGCT
>probe:Drosophila_2:1637552_s_at:588:419; Interrogation_Position=2891; Antisense; GAGCTAGCAAAACCTAAGCAGACAG
>probe:Drosophila_2:1637552_s_at:131:517; Interrogation_Position=2970; Antisense; GTGTGCAATGTATGTTAAAAACTCG
>probe:Drosophila_2:1637552_s_at:365:159; Interrogation_Position=3024; Antisense; ACAAAATCCATTTCGATGATGATAT

Paste this into a BLAST search page for me
GAAAAGCCGGTCTCCGAAGAGACGAGTCTCCGAAGAGACGAGCGCATAGGAGACGAGCGCATAGGACGCGAGAAAGATGCAAAAGCAGCGCGGCAACCATGCAACCATTGCCAAAAGAAACAGCGAAGAGCAGTCGAAAATATTTACAAAGAACTTGAGGAAATCTGCTGAGAAAACTATCGCAGATTAGAGTTAAGTTAGCAAAAGTAAAAAACCACTGCATGGAAACCGATGGCAAGAGCGATGTAAAGAAACTATTTTGCTAATTTTGAGCTGAGCTAGCAAAACCTAAGCAGACAGGTGTGCAATGTATGTTAAAAACTCGACAAAATCCATTTCGATGATGATAT

Full Affymetrix probeset data:

Annotations for 1637552_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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