Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637576_s_at:

>probe:Drosophila_2:1637576_s_at:588:93; Interrogation_Position=1515; Antisense; AGTTGCAAAGCCTGCTGGGCGATAA
>probe:Drosophila_2:1637576_s_at:472:27; Interrogation_Position=1579; Antisense; ATACCACAATGAGCCCATTACGCGA
>probe:Drosophila_2:1637576_s_at:610:7; Interrogation_Position=1595; Antisense; ATTACGCGACCCATTAACTTTGCCT
>probe:Drosophila_2:1637576_s_at:189:191; Interrogation_Position=1610; Antisense; AACTTTGCCTACACTGGTATTGTCA
>probe:Drosophila_2:1637576_s_at:584:481; Interrogation_Position=1626; Antisense; GTATTGTCAATGTGCTGGGCTTCCC
>probe:Drosophila_2:1637576_s_at:245:593; Interrogation_Position=1698; Antisense; TGGGTGTCCAAATCATCGCCAACTT
>probe:Drosophila_2:1637576_s_at:359:73; Interrogation_Position=1728; Antisense; AGGATCGACTTTGTTTGGCCGTTGC
>probe:Drosophila_2:1637576_s_at:21:473; Interrogation_Position=1796; Antisense; GTTCGGCTCTAGGAGCAGTCTCAAA
>probe:Drosophila_2:1637576_s_at:104:511; Interrogation_Position=1822; Antisense; GTGCAAGTATGCAGCTTAGCTAGCT
>probe:Drosophila_2:1637576_s_at:695:83; Interrogation_Position=1857; Antisense; AGTGGTCAGGTTAACGTCCTGGTCT
>probe:Drosophila_2:1637576_s_at:712:169; Interrogation_Position=1935; Antisense; AAAGGTATTCCTTGTGTACTCCAGT
>probe:Drosophila_2:1637576_s_at:340:489; Interrogation_Position=1950; Antisense; GTACTCCAGTGCCTCATTGTAATAT
>probe:Drosophila_2:1637576_s_at:42:239; Interrogation_Position=2021; Antisense; AATCTAATCATAGATCCGCGCGGAT
>probe:Drosophila_2:1637576_s_at:241:633; Interrogation_Position=2045; Antisense; TCCGTTCCCGTTTTGCATTTATAAT

Paste this into a BLAST search page for me
AGTTGCAAAGCCTGCTGGGCGATAAATACCACAATGAGCCCATTACGCGAATTACGCGACCCATTAACTTTGCCTAACTTTGCCTACACTGGTATTGTCAGTATTGTCAATGTGCTGGGCTTCCCTGGGTGTCCAAATCATCGCCAACTTAGGATCGACTTTGTTTGGCCGTTGCGTTCGGCTCTAGGAGCAGTCTCAAAGTGCAAGTATGCAGCTTAGCTAGCTAGTGGTCAGGTTAACGTCCTGGTCTAAAGGTATTCCTTGTGTACTCCAGTGTACTCCAGTGCCTCATTGTAATATAATCTAATCATAGATCCGCGCGGATTCCGTTCCCGTTTTGCATTTATAAT

Full Affymetrix probeset data:

Annotations for 1637576_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime