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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637579_at:

>probe:Drosophila_2:1637579_at:301:695; Interrogation_Position=1379; Antisense; TTTCCGATTTTCTATGTGAGTTTTC
>probe:Drosophila_2:1637579_at:199:305; Interrogation_Position=1382; Antisense; CCGATTTTCTATGTGAGTTTTCAAT
>probe:Drosophila_2:1637579_at:131:511; Interrogation_Position=1394; Antisense; GTGAGTTTTCAATTTACCTGTTGTT
>probe:Drosophila_2:1637579_at:367:699; Interrogation_Position=1406; Antisense; TTTACCTGTTGTTTTTTCTCAGACA
>probe:Drosophila_2:1637579_at:281:671; Interrogation_Position=1408; Antisense; TACCTGTTGTTTTTTCTCAGACAAG
>probe:Drosophila_2:1637579_at:28:307; Interrogation_Position=1410; Antisense; CCTGTTGTTTTTTCTCAGACAAGAA
>probe:Drosophila_2:1637579_at:168:477; Interrogation_Position=1416; Antisense; GTTTTTTCTCAGACAAGAATTCACA
>probe:Drosophila_2:1637579_at:447:393; Interrogation_Position=1427; Antisense; GACAAGAATTCACACAAATTGCGTA
>probe:Drosophila_2:1637579_at:335:163; Interrogation_Position=1442; Antisense; AAATTGCGTACAATCCTGCAGCTGG
>probe:Drosophila_2:1637579_at:150:9; Interrogation_Position=1444; Antisense; ATTGCGTACAATCCTGCAGCTGGCG
>probe:Drosophila_2:1637579_at:448:621; Interrogation_Position=1446; Antisense; TGCGTACAATCCTGCAGCTGGCGTT
>probe:Drosophila_2:1637579_at:644:489; Interrogation_Position=1449; Antisense; GTACAATCCTGCAGCTGGCGTTGGA
>probe:Drosophila_2:1637579_at:352:665; Interrogation_Position=1450; Antisense; TACAATCCTGCAGCTGGCGTTGGAG
>probe:Drosophila_2:1637579_at:574:235; Interrogation_Position=1453; Antisense; AATCCTGCAGCTGGCGTTGGAGGTC

Paste this into a BLAST search page for me
TTTCCGATTTTCTATGTGAGTTTTCCCGATTTTCTATGTGAGTTTTCAATGTGAGTTTTCAATTTACCTGTTGTTTTTACCTGTTGTTTTTTCTCAGACATACCTGTTGTTTTTTCTCAGACAAGCCTGTTGTTTTTTCTCAGACAAGAAGTTTTTTCTCAGACAAGAATTCACAGACAAGAATTCACACAAATTGCGTAAAATTGCGTACAATCCTGCAGCTGGATTGCGTACAATCCTGCAGCTGGCGTGCGTACAATCCTGCAGCTGGCGTTGTACAATCCTGCAGCTGGCGTTGGATACAATCCTGCAGCTGGCGTTGGAGAATCCTGCAGCTGGCGTTGGAGGTC

Full Affymetrix probeset data:

Annotations for 1637579_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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