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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637599_at:

>probe:Drosophila_2:1637599_at:278:307; Interrogation_Position=5185; Antisense; CCTCTAGATATGTACACCATCCTGT
>probe:Drosophila_2:1637599_at:21:97; Interrogation_Position=5190; Antisense; AGATATGTACACCATCCTGTCTATT
>probe:Drosophila_2:1637599_at:665:23; Interrogation_Position=5192; Antisense; ATATGTACACCATCCTGTCTATTTC
>probe:Drosophila_2:1637599_at:529:599; Interrogation_Position=5195; Antisense; TGTACACCATCCTGTCTATTTCCTT
>probe:Drosophila_2:1637599_at:81:129; Interrogation_Position=5200; Antisense; ACCATCCTGTCTATTTCCTTGGGTG
>probe:Drosophila_2:1637599_at:185:631; Interrogation_Position=5204; Antisense; TCCTGTCTATTTCCTTGGGTGGTAA
>probe:Drosophila_2:1637599_at:722:497; Interrogation_Position=5208; Antisense; GTCTATTTCCTTGGGTGGTAAGCAA
>probe:Drosophila_2:1637599_at:698:695; Interrogation_Position=5214; Antisense; TTCCTTGGGTGGTAAGCAAACCTAT
>probe:Drosophila_2:1637599_at:98:539; Interrogation_Position=5224; Antisense; GGTAAGCAAACCTATCTATTCCTCC
>probe:Drosophila_2:1637599_at:319:659; Interrogation_Position=5226; Antisense; TAAGCAAACCTATCTATTCCTCCGG
>probe:Drosophila_2:1637599_at:560:175; Interrogation_Position=5231; Antisense; AAACCTATCTATTCCTCCGGCGAAG
>probe:Drosophila_2:1637599_at:399:277; Interrogation_Position=5235; Antisense; CTATCTATTCCTCCGGCGAAGGTTT
>probe:Drosophila_2:1637599_at:326:645; Interrogation_Position=5261; Antisense; TCTTCTTCGGGCACAACTATGGTGC
>probe:Drosophila_2:1637599_at:20:527; Interrogation_Position=5269; Antisense; GGGCACAACTATGGTGCCATCCACT

Paste this into a BLAST search page for me
CCTCTAGATATGTACACCATCCTGTAGATATGTACACCATCCTGTCTATTATATGTACACCATCCTGTCTATTTCTGTACACCATCCTGTCTATTTCCTTACCATCCTGTCTATTTCCTTGGGTGTCCTGTCTATTTCCTTGGGTGGTAAGTCTATTTCCTTGGGTGGTAAGCAATTCCTTGGGTGGTAAGCAAACCTATGGTAAGCAAACCTATCTATTCCTCCTAAGCAAACCTATCTATTCCTCCGGAAACCTATCTATTCCTCCGGCGAAGCTATCTATTCCTCCGGCGAAGGTTTTCTTCTTCGGGCACAACTATGGTGCGGGCACAACTATGGTGCCATCCACT

Full Affymetrix probeset data:

Annotations for 1637599_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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