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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637605_s_at:

>probe:Drosophila_2:1637605_s_at:612:211; Interrogation_Position=1242; Antisense; AAGAGCAGGCCTCGTGTATCGAAGA
>probe:Drosophila_2:1637605_s_at:709:483; Interrogation_Position=1257; Antisense; GTATCGAAGAGACCACGTACATCAA
>probe:Drosophila_2:1637605_s_at:101:613; Interrogation_Position=1310; Antisense; TGAAGGAACGTTTTATAGTGCCATC
>probe:Drosophila_2:1637605_s_at:340:585; Interrogation_Position=1348; Antisense; TGGAACAACCAGGTGAACTCCCATC
>probe:Drosophila_2:1637605_s_at:125:301; Interrogation_Position=1372; Antisense; CCCAACCAGGCATTTGTCCAGGAAA
>probe:Drosophila_2:1637605_s_at:622:559; Interrogation_Position=1392; Antisense; GGAAACAAAGCCACCGGAGACCTTG
>probe:Drosophila_2:1637605_s_at:296:219; Interrogation_Position=1428; Antisense; AAGTCCACAGGAAAACGCCCGCATT
>probe:Drosophila_2:1637605_s_at:273:321; Interrogation_Position=1444; Antisense; GCCCGCATTTTGTTTGTTTAATCGA
>probe:Drosophila_2:1637605_s_at:524:211; Interrogation_Position=1493; Antisense; AAGACTTTCCAACCTAAATCGCAAT
>probe:Drosophila_2:1637605_s_at:168:45; Interrogation_Position=1510; Antisense; ATCGCAATTGGCAATCGAAGCCTGT
>probe:Drosophila_2:1637605_s_at:256:379; Interrogation_Position=1526; Antisense; GAAGCCTGTACTTAGAATCCCAATC
>probe:Drosophila_2:1637605_s_at:376:247; Interrogation_Position=1593; Antisense; AATTGCGAAGCATCTCATTCACAGA
>probe:Drosophila_2:1637605_s_at:493:179; Interrogation_Position=1795; Antisense; AAACACTGTATGCACAGCTGCGCCT
>probe:Drosophila_2:1637605_s_at:5:625; Interrogation_Position=1813; Antisense; TGCGCCTGGGCATTCGAACAATTTT

Paste this into a BLAST search page for me
AAGAGCAGGCCTCGTGTATCGAAGAGTATCGAAGAGACCACGTACATCAATGAAGGAACGTTTTATAGTGCCATCTGGAACAACCAGGTGAACTCCCATCCCCAACCAGGCATTTGTCCAGGAAAGGAAACAAAGCCACCGGAGACCTTGAAGTCCACAGGAAAACGCCCGCATTGCCCGCATTTTGTTTGTTTAATCGAAAGACTTTCCAACCTAAATCGCAATATCGCAATTGGCAATCGAAGCCTGTGAAGCCTGTACTTAGAATCCCAATCAATTGCGAAGCATCTCATTCACAGAAAACACTGTATGCACAGCTGCGCCTTGCGCCTGGGCATTCGAACAATTTT

Full Affymetrix probeset data:

Annotations for 1637605_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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