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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637625_s_at:

>probe:Drosophila_2:1637625_s_at:85:709; Interrogation_Position=3117; Antisense; TTAAGTTTTCCTACGAGCTGCTACC
>probe:Drosophila_2:1637625_s_at:368:451; Interrogation_Position=3225; Antisense; GATCGAGCAGCTAAGAACGCATGAA
>probe:Drosophila_2:1637625_s_at:491:63; Interrogation_Position=3264; Antisense; ATGTGGTTCCTAATCTAGTCCCTAA
>probe:Drosophila_2:1637625_s_at:33:165; Interrogation_Position=3324; Antisense; AAATCGAAATTGTTACGCCTAGCCG
>probe:Drosophila_2:1637625_s_at:276:133; Interrogation_Position=3338; Antisense; ACGCCTAGCCGAGAACTTGTGTATT
>probe:Drosophila_2:1637625_s_at:429:701; Interrogation_Position=3367; Antisense; TTTTATATCGCTTAGATTGTTCCCC
>probe:Drosophila_2:1637625_s_at:458:107; Interrogation_Position=3477; Antisense; AGAAGAAACTTGCTAGTCGCCGCTG
>probe:Drosophila_2:1637625_s_at:376:503; Interrogation_Position=3492; Antisense; GTCGCCGCTGCATAACTGTGTAAAT
>probe:Drosophila_2:1637625_s_at:690:229; Interrogation_Position=3514; Antisense; AATGTGGCACACAAACCATTTAGTT
>probe:Drosophila_2:1637625_s_at:166:85; Interrogation_Position=3539; Antisense; AGTGTTAGTGCTACTGTACGTGTAA
>probe:Drosophila_2:1637625_s_at:676:161; Interrogation_Position=3567; Antisense; ACAATTAATTGCCTATCCAGACCCA
>probe:Drosophila_2:1637625_s_at:727:47; Interrogation_Position=3581; Antisense; ATCCAGACCCAGTAACCACAATTTA
>probe:Drosophila_2:1637625_s_at:340:563; Interrogation_Position=3609; Antisense; GGAAGCACACACCAAACGAAACTGA
>probe:Drosophila_2:1637625_s_at:67:187; Interrogation_Position=3689; Antisense; AACAATGAATTTACTTTGTGGCCCA

Paste this into a BLAST search page for me
TTAAGTTTTCCTACGAGCTGCTACCGATCGAGCAGCTAAGAACGCATGAAATGTGGTTCCTAATCTAGTCCCTAAAAATCGAAATTGTTACGCCTAGCCGACGCCTAGCCGAGAACTTGTGTATTTTTTATATCGCTTAGATTGTTCCCCAGAAGAAACTTGCTAGTCGCCGCTGGTCGCCGCTGCATAACTGTGTAAATAATGTGGCACACAAACCATTTAGTTAGTGTTAGTGCTACTGTACGTGTAAACAATTAATTGCCTATCCAGACCCAATCCAGACCCAGTAACCACAATTTAGGAAGCACACACCAAACGAAACTGAAACAATGAATTTACTTTGTGGCCCA

Full Affymetrix probeset data:

Annotations for 1637625_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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