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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637659_a_at:

>probe:Drosophila_2:1637659_a_at:190:563; Interrogation_Position=1413; Antisense; GGAACGTGCGTAGAGCCCAACAGCT
>probe:Drosophila_2:1637659_a_at:306:223; Interrogation_Position=1467; Antisense; AAGGTGCCGTACGAGTGTGTACCCT
>probe:Drosophila_2:1637659_a_at:391:399; Interrogation_Position=1534; Antisense; GACACTGTGAATGCGATCCCGGCCA
>probe:Drosophila_2:1637659_a_at:527:261; Interrogation_Position=1557; Antisense; CATGTGGTTACCAACTCCAGTGAAC
>probe:Drosophila_2:1637659_a_at:496:473; Interrogation_Position=1663; Antisense; GTTACCGATTTTTGCCCGACAGCAG
>probe:Drosophila_2:1637659_a_at:20:131; Interrogation_Position=1700; Antisense; ACCGATTTGCTCGAAAGGATGCCTT
>probe:Drosophila_2:1637659_a_at:385:129; Interrogation_Position=1745; Antisense; ACCAGACACCTGTGCGGGCTTTGAA
>probe:Drosophila_2:1637659_a_at:261:611; Interrogation_Position=1766; Antisense; TGAATCCCTAATAAGTCCGACCACT
>probe:Drosophila_2:1637659_a_at:144:9; Interrogation_Position=1805; Antisense; ATTCCATTGGTCCATGTTTGTCCTG
>probe:Drosophila_2:1637659_a_at:386:479; Interrogation_Position=1820; Antisense; GTTTGTCCTGGCAATTTTACTCTGC
>probe:Drosophila_2:1637659_a_at:161:145; Interrogation_Position=1838; Antisense; ACTCTGCCTGGCTCTGGTAATGATT
>probe:Drosophila_2:1637659_a_at:541:493; Interrogation_Position=1854; Antisense; GTAATGATTCCCCTGTTGGTGCTCC
>probe:Drosophila_2:1637659_a_at:316:575; Interrogation_Position=1905; Antisense; GGCGACAAGCAAAGTTCCCGGCTAA
>probe:Drosophila_2:1637659_a_at:107:573; Interrogation_Position=1924; Antisense; GGCTAATCGAGAATCCTTCCTATGG

Paste this into a BLAST search page for me
GGAACGTGCGTAGAGCCCAACAGCTAAGGTGCCGTACGAGTGTGTACCCTGACACTGTGAATGCGATCCCGGCCACATGTGGTTACCAACTCCAGTGAACGTTACCGATTTTTGCCCGACAGCAGACCGATTTGCTCGAAAGGATGCCTTACCAGACACCTGTGCGGGCTTTGAATGAATCCCTAATAAGTCCGACCACTATTCCATTGGTCCATGTTTGTCCTGGTTTGTCCTGGCAATTTTACTCTGCACTCTGCCTGGCTCTGGTAATGATTGTAATGATTCCCCTGTTGGTGCTCCGGCGACAAGCAAAGTTCCCGGCTAAGGCTAATCGAGAATCCTTCCTATGG

Full Affymetrix probeset data:

Annotations for 1637659_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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