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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637700_s_at:

>probe:Drosophila_2:1637700_s_at:39:315; Interrogation_Position=1454; Antisense; GCCTTCCGCGTGATTGTCGTCGATT
>probe:Drosophila_2:1637700_s_at:424:367; Interrogation_Position=1530; Antisense; GAATCCCGTGCACCTACGTGCTGAT
>probe:Drosophila_2:1637700_s_at:719:139; Interrogation_Position=1545; Antisense; ACGTGCTGATCAACGCCGTGGGCTA
>probe:Drosophila_2:1637700_s_at:537:309; Interrogation_Position=1620; Antisense; CCAACGGATACGTGATGGCGCGAAC
>probe:Drosophila_2:1637700_s_at:11:161; Interrogation_Position=1680; Antisense; ACAACGTGCCGGTGCTCGTGTGCTG
>probe:Drosophila_2:1637700_s_at:434:707; Interrogation_Position=1718; Antisense; TTCAGCGAGCGCTTCCAGACGGACG
>probe:Drosophila_2:1637700_s_at:320:411; Interrogation_Position=1739; Antisense; GACGCCATCGTCTACAACGAGCTGA
>probe:Drosophila_2:1637700_s_at:536:609; Interrogation_Position=1761; Antisense; TGAGCGATCCCAACCAACTGGTGCG
>probe:Drosophila_2:1637700_s_at:647:323; Interrogation_Position=1788; Antisense; GCGACAAGTGCCAGCTAAGCAACTG
>probe:Drosophila_2:1637700_s_at:205:311; Interrogation_Position=1817; Antisense; GCCAAGGGAAAGCTGTTGCCGCTCA
>probe:Drosophila_2:1637700_s_at:281:609; Interrogation_Position=1845; Antisense; TGAGCTACGACATTACTCCGCCGGA
>probe:Drosophila_2:1637700_s_at:38:29; Interrogation_Position=1928; Antisense; ATACTCCGCATCAAGCCAGACATTG
>probe:Drosophila_2:1637700_s_at:717:401; Interrogation_Position=1946; Antisense; GACATTGGCTACTAATCAGACTTCA
>probe:Drosophila_2:1637700_s_at:573:449; Interrogation_Position=1973; Antisense; GATCGCTCAGTAGAACTCGCAGTTG

Paste this into a BLAST search page for me
GCCTTCCGCGTGATTGTCGTCGATTGAATCCCGTGCACCTACGTGCTGATACGTGCTGATCAACGCCGTGGGCTACCAACGGATACGTGATGGCGCGAACACAACGTGCCGGTGCTCGTGTGCTGTTCAGCGAGCGCTTCCAGACGGACGGACGCCATCGTCTACAACGAGCTGATGAGCGATCCCAACCAACTGGTGCGGCGACAAGTGCCAGCTAAGCAACTGGCCAAGGGAAAGCTGTTGCCGCTCATGAGCTACGACATTACTCCGCCGGAATACTCCGCATCAAGCCAGACATTGGACATTGGCTACTAATCAGACTTCAGATCGCTCAGTAGAACTCGCAGTTG

Full Affymetrix probeset data:

Annotations for 1637700_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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