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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637762_s_at:

>probe:Drosophila_2:1637762_s_at:436:521; Interrogation_Position=3489; Antisense; GTGGCTATCTGCAATATTCTTATCC
>probe:Drosophila_2:1637762_s_at:721:7; Interrogation_Position=3504; Antisense; ATTCTTATCCCGATCTTCTCGGAAA
>probe:Drosophila_2:1637762_s_at:360:581; Interrogation_Position=3535; Antisense; TGGCCATCGAAGTGCATCCCATGAA
>probe:Drosophila_2:1637762_s_at:588:45; Interrogation_Position=3550; Antisense; ATCCCATGAAGCTGACTTTTCCGGC
>probe:Drosophila_2:1637762_s_at:159:113; Interrogation_Position=3612; Antisense; AGCACTCCGCCTAATGCAATTATAT
>probe:Drosophila_2:1637762_s_at:154:219; Interrogation_Position=3660; Antisense; AAGTACATGGCCATCGCTGGGATTC
>probe:Drosophila_2:1637762_s_at:277:593; Interrogation_Position=3677; Antisense; TGGGATTCTGCCTACATGTTGGGCC
>probe:Drosophila_2:1637762_s_at:456:721; Interrogation_Position=3702; Antisense; TTCCTATGTCTGCTGTTCACCGGAA
>probe:Drosophila_2:1637762_s_at:325:381; Interrogation_Position=3724; Antisense; GAACCGTGTGGACCATGCTGATCTA
>probe:Drosophila_2:1637762_s_at:476:561; Interrogation_Position=3761; Antisense; GGAATTCCCCTCTTGGGCTATTTAG
>probe:Drosophila_2:1637762_s_at:618:527; Interrogation_Position=3813; Antisense; GGGACAATCCATATCTACAGACATA
>probe:Drosophila_2:1637762_s_at:5:197; Interrogation_Position=3930; Antisense; AACTGGATCTTTGTTTTGGCAGCAA
>probe:Drosophila_2:1637762_s_at:261:245; Interrogation_Position=3953; Antisense; AATTTTGTTGAGTTGCATGCCGCGT
>probe:Drosophila_2:1637762_s_at:462:533; Interrogation_Position=3993; Antisense; GGTGTGCTCACATTACTAATCTTAT

Paste this into a BLAST search page for me
GTGGCTATCTGCAATATTCTTATCCATTCTTATCCCGATCTTCTCGGAAATGGCCATCGAAGTGCATCCCATGAAATCCCATGAAGCTGACTTTTCCGGCAGCACTCCGCCTAATGCAATTATATAAGTACATGGCCATCGCTGGGATTCTGGGATTCTGCCTACATGTTGGGCCTTCCTATGTCTGCTGTTCACCGGAAGAACCGTGTGGACCATGCTGATCTAGGAATTCCCCTCTTGGGCTATTTAGGGGACAATCCATATCTACAGACATAAACTGGATCTTTGTTTTGGCAGCAAAATTTTGTTGAGTTGCATGCCGCGTGGTGTGCTCACATTACTAATCTTAT

Full Affymetrix probeset data:

Annotations for 1637762_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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