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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637763_a_at:

>probe:Drosophila_2:1637763_a_at:142:291; Interrogation_Position=1482; Antisense; CGTGCTGACATTCGGCGGTGATTAC
>probe:Drosophila_2:1637763_a_at:15:463; Interrogation_Position=1501; Antisense; GATTACGCCGAAAACTTGCATTTGG
>probe:Drosophila_2:1637763_a_at:156:25; Interrogation_Position=1553; Antisense; ATATGTTGGAGCGTCCACAGACCAC
>probe:Drosophila_2:1637763_a_at:93:651; Interrogation_Position=1579; Antisense; TCACCTGCTGGATTGGGCGTTATGA
>probe:Drosophila_2:1637763_a_at:516:55; Interrogation_Position=1621; Antisense; ATGAAAGTGGTGTCCCTGGAGCACG
>probe:Drosophila_2:1637763_a_at:609:143; Interrogation_Position=1669; Antisense; ACTGATGTCTTTTCGCCAACAACTA
>probe:Drosophila_2:1637763_a_at:598:425; Interrogation_Position=1706; Antisense; GAGAGCTGCTCTACAAGCGCTGGGC
>probe:Drosophila_2:1637763_a_at:474:479; Interrogation_Position=1794; Antisense; GTTTGCTCAGCGAGAACTTGATCCC
>probe:Drosophila_2:1637763_a_at:645:383; Interrogation_Position=1807; Antisense; GAACTTGATCCCAATTTACCTGTAA
>probe:Drosophila_2:1637763_a_at:534:487; Interrogation_Position=1840; Antisense; GTACCGGGCAGTATATTCCTGACCA
>probe:Drosophila_2:1637763_a_at:66:285; Interrogation_Position=1858; Antisense; CTGACCACTTCTTTTGCGATGATTA
>probe:Drosophila_2:1637763_a_at:472:327; Interrogation_Position=1873; Antisense; GCGATGATTATCCTGGCTAACTACT
>probe:Drosophila_2:1637763_a_at:266:699; Interrogation_Position=1897; Antisense; TTAAAGTCCAATCCCCTGAAATAGT
>probe:Drosophila_2:1637763_a_at:450:211; Interrogation_Position=1935; Antisense; AAGAACGGCTGCTCTATCTAGTCAA

Paste this into a BLAST search page for me
CGTGCTGACATTCGGCGGTGATTACGATTACGCCGAAAACTTGCATTTGGATATGTTGGAGCGTCCACAGACCACTCACCTGCTGGATTGGGCGTTATGAATGAAAGTGGTGTCCCTGGAGCACGACTGATGTCTTTTCGCCAACAACTAGAGAGCTGCTCTACAAGCGCTGGGCGTTTGCTCAGCGAGAACTTGATCCCGAACTTGATCCCAATTTACCTGTAAGTACCGGGCAGTATATTCCTGACCACTGACCACTTCTTTTGCGATGATTAGCGATGATTATCCTGGCTAACTACTTTAAAGTCCAATCCCCTGAAATAGTAAGAACGGCTGCTCTATCTAGTCAA

Full Affymetrix probeset data:

Annotations for 1637763_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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