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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637770_a_at:

>probe:Drosophila_2:1637770_a_at:510:63; Interrogation_Position=4705; Antisense; ATGGACCTAGTCTTTGGTGATCCCG
>probe:Drosophila_2:1637770_a_at:449:107; Interrogation_Position=4751; Antisense; AGAAAAGCGGCCTAGCCACAGTTTC
>probe:Drosophila_2:1637770_a_at:457:697; Interrogation_Position=4772; Antisense; TTTCTACCGAGAAACGCGTCGCAGG
>probe:Drosophila_2:1637770_a_at:555:41; Interrogation_Position=4819; Antisense; ATCGGCAAGCCAGCTGGTGGACTTC
>probe:Drosophila_2:1637770_a_at:45:509; Interrogation_Position=4871; Antisense; GTGCTGTCGTGGTCTCTGCCAAAGA
>probe:Drosophila_2:1637770_a_at:258:393; Interrogation_Position=4896; Antisense; GAAAGATAATCGTCCCAATGCCTCC
>probe:Drosophila_2:1637770_a_at:372:291; Interrogation_Position=4920; Antisense; CGTTCGCCCACTGAGCAAGGAGAAA
>probe:Drosophila_2:1637770_a_at:433:357; Interrogation_Position=4950; Antisense; GCAACATTACGGCTCTGCTACAGAG
>probe:Drosophila_2:1637770_a_at:658:119; Interrogation_Position=5007; Antisense; TAGCGGAAACCGCAAGTCCAGGGCC
>probe:Drosophila_2:1637770_a_at:275:499; Interrogation_Position=5022; Antisense; GTCCAGGGCCAACAACTCTTAAAGG
>probe:Drosophila_2:1637770_a_at:114:435; Interrogation_Position=5054; Antisense; GAGGAGAAACAAACCGCGTTGCCAA
>probe:Drosophila_2:1637770_a_at:57:439; Interrogation_Position=5082; Antisense; GAGGCATCTGTGAAACACCTTGCAG
>probe:Drosophila_2:1637770_a_at:454:129; Interrogation_Position=5098; Antisense; ACCTTGCAGGATGCCTCTAAAGCTG
>probe:Drosophila_2:1637770_a_at:113:643; Interrogation_Position=5113; Antisense; TCTAAAGCTGCATCCGACTGTAAAT

Paste this into a BLAST search page for me
ATGGACCTAGTCTTTGGTGATCCCGAGAAAAGCGGCCTAGCCACAGTTTCTTTCTACCGAGAAACGCGTCGCAGGATCGGCAAGCCAGCTGGTGGACTTCGTGCTGTCGTGGTCTCTGCCAAAGAGAAAGATAATCGTCCCAATGCCTCCCGTTCGCCCACTGAGCAAGGAGAAAGCAACATTACGGCTCTGCTACAGAGTAGCGGAAACCGCAAGTCCAGGGCCGTCCAGGGCCAACAACTCTTAAAGGGAGGAGAAACAAACCGCGTTGCCAAGAGGCATCTGTGAAACACCTTGCAGACCTTGCAGGATGCCTCTAAAGCTGTCTAAAGCTGCATCCGACTGTAAAT

Full Affymetrix probeset data:

Annotations for 1637770_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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