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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637774_s_at:

>probe:Drosophila_2:1637774_s_at:16:187; Interrogation_Position=1286; Antisense; AACAATCTCACCATATCGGCGCATT
>probe:Drosophila_2:1637774_s_at:119:575; Interrogation_Position=1303; Antisense; GGCGCATTGCCGCTCGGAAAAACTG
>probe:Drosophila_2:1637774_s_at:31:501; Interrogation_Position=1335; Antisense; GTCTGGGTCTGAGCATGATGTCCAA
>probe:Drosophila_2:1637774_s_at:646:5; Interrogation_Position=1367; Antisense; ATTGTTATCACAGTGGGCCAGCTGC
>probe:Drosophila_2:1637774_s_at:121:441; Interrogation_Position=1395; Antisense; GATGGGTGCGAGACTACGCCGACTC
>probe:Drosophila_2:1637774_s_at:607:673; Interrogation_Position=1421; Antisense; TACCTAATCTGCCTTTATGCTCAAG
>probe:Drosophila_2:1637774_s_at:391:517; Interrogation_Position=1463; Antisense; GTGGTTCTTGTTTGGACACCGGAGA
>probe:Drosophila_2:1637774_s_at:387:551; Interrogation_Position=1483; Antisense; GGAGATATTGTACCGCCACCGCAGG
>probe:Drosophila_2:1637774_s_at:705:371; Interrogation_Position=1559; Antisense; GAAGTGGCCAAACTCAACTCCTAAA
>probe:Drosophila_2:1637774_s_at:343:165; Interrogation_Position=1581; Antisense; AAATCTCTGGTCACTACCTGACTGG
>probe:Drosophila_2:1637774_s_at:331:573; Interrogation_Position=1651; Antisense; GGCGATGAAATGACTTCCCCGTAGG
>probe:Drosophila_2:1637774_s_at:478:145; Interrogation_Position=1685; Antisense; ACTCTCGCCGCAGTAGTTATCTGAG
>probe:Drosophila_2:1637774_s_at:1:689; Interrogation_Position=1781; Antisense; TATTTATTACCATTTTAGCCCCTAG
>probe:Drosophila_2:1637774_s_at:316:103; Interrogation_Position=1804; Antisense; AGACCTAACTTTTGTACTGCCATAA

Paste this into a BLAST search page for me
AACAATCTCACCATATCGGCGCATTGGCGCATTGCCGCTCGGAAAAACTGGTCTGGGTCTGAGCATGATGTCCAAATTGTTATCACAGTGGGCCAGCTGCGATGGGTGCGAGACTACGCCGACTCTACCTAATCTGCCTTTATGCTCAAGGTGGTTCTTGTTTGGACACCGGAGAGGAGATATTGTACCGCCACCGCAGGGAAGTGGCCAAACTCAACTCCTAAAAAATCTCTGGTCACTACCTGACTGGGGCGATGAAATGACTTCCCCGTAGGACTCTCGCCGCAGTAGTTATCTGAGTATTTATTACCATTTTAGCCCCTAGAGACCTAACTTTTGTACTGCCATAA

Full Affymetrix probeset data:

Annotations for 1637774_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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