FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637787_a_at:

>probe:Drosophila_2:1637787_a_at:368:633; Interrogation_Position=2716; Antisense; TCCCATTATGGTTGATCCAGCCACA
>probe:Drosophila_2:1637787_a_at:536:261; Interrogation_Position=2733; Antisense; CAGCCACAGGATCCAAGGTTGCCAA
>probe:Drosophila_2:1637787_a_at:424:101; Interrogation_Position=2772; Antisense; AGACAATCAAGCCTACTGGTTCCGT
>probe:Drosophila_2:1637787_a_at:473:139; Interrogation_Position=2786; Antisense; ACTGGTTCCGTTCTGGCTCAAGGCA
>probe:Drosophila_2:1637787_a_at:298:495; Interrogation_Position=2817; Antisense; GTCAAGCGGGCAACGTGGGCACCAA
>probe:Drosophila_2:1637787_a_at:613:211; Interrogation_Position=2840; Antisense; AAGAGCTACCTCCAGATGATCAATA
>probe:Drosophila_2:1637787_a_at:462:99; Interrogation_Position=2853; Antisense; AGATGATCAATACCGCACCTGGTGC
>probe:Drosophila_2:1637787_a_at:370:509; Interrogation_Position=2874; Antisense; GTGCATCCAAAACTGTTGCTGGCGA
>probe:Drosophila_2:1637787_a_at:608:331; Interrogation_Position=2891; Antisense; GCTGGCGACGGCAAAGGTTCTGTAC
>probe:Drosophila_2:1637787_a_at:621:237; Interrogation_Position=2931; Antisense; AATCGGCAACCGGACTCAAGCAGTT
>probe:Drosophila_2:1637787_a_at:103:457; Interrogation_Position=3103; Antisense; GATAGCTGCTACTTTAACCCATAAT
>probe:Drosophila_2:1637787_a_at:674:5; Interrogation_Position=3154; Antisense; ATTGCGTGCCTGATACATTTTCGTA
>probe:Drosophila_2:1637787_a_at:184:639; Interrogation_Position=3174; Antisense; TCGTACTTAGCCGATATCTGTGTAA
>probe:Drosophila_2:1637787_a_at:641:723; Interrogation_Position=3237; Antisense; TTGAATTACCCTCTTTCCTCAATGT

Paste this into a BLAST search page for me
TCCCATTATGGTTGATCCAGCCACACAGCCACAGGATCCAAGGTTGCCAAAGACAATCAAGCCTACTGGTTCCGTACTGGTTCCGTTCTGGCTCAAGGCAGTCAAGCGGGCAACGTGGGCACCAAAAGAGCTACCTCCAGATGATCAATAAGATGATCAATACCGCACCTGGTGCGTGCATCCAAAACTGTTGCTGGCGAGCTGGCGACGGCAAAGGTTCTGTACAATCGGCAACCGGACTCAAGCAGTTGATAGCTGCTACTTTAACCCATAATATTGCGTGCCTGATACATTTTCGTATCGTACTTAGCCGATATCTGTGTAATTGAATTACCCTCTTTCCTCAATGT

Full Affymetrix probeset data:

Annotations for 1637787_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720