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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637815_s_at:

>probe:Drosophila_2:1637815_s_at:466:135; Interrogation_Position=2735; Antisense; ACGCTGGTACACTCCATGGTGGCGC
>probe:Drosophila_2:1637815_s_at:53:65; Interrogation_Position=2750; Antisense; ATGGTGGCGCATTTAGAGCCGGTCA
>probe:Drosophila_2:1637815_s_at:220:447; Interrogation_Position=2789; Antisense; GATGCTCATGGCCTGTATTTGCTAT
>probe:Drosophila_2:1637815_s_at:702:601; Interrogation_Position=2802; Antisense; TGTATTTGCTATCCGGCTCGCACGA
>probe:Drosophila_2:1637815_s_at:363:137; Interrogation_Position=2823; Antisense; ACGACTGCTCGATACGGCTGTGGAA
>probe:Drosophila_2:1637815_s_at:361:349; Interrogation_Position=2869; Antisense; GCAGGAGATCACAGCGCATCGCAAG
>probe:Drosophila_2:1637815_s_at:553:295; Interrogation_Position=2902; Antisense; CGAGAGCATATTCGATGTGGCCTTC
>probe:Drosophila_2:1637815_s_at:199:175; Interrogation_Position=2935; Antisense; AAAGCCGTACATTGCTAGTGCCGGG
>probe:Drosophila_2:1637815_s_at:562:315; Interrogation_Position=2967; Antisense; GCCTCGCCAAGGTCTTTGTCTAAAA
>probe:Drosophila_2:1637815_s_at:567:293; Interrogation_Position=3006; Antisense; CGAGACGAGACAGACAGACCCACAT
>probe:Drosophila_2:1637815_s_at:657:575; Interrogation_Position=3037; Antisense; GGCCGCGTCGGATCGAACGAATTCA
>probe:Drosophila_2:1637815_s_at:625:9; Interrogation_Position=3064; Antisense; ATTCGGAATCCAGAGTGCATATGCA
>probe:Drosophila_2:1637815_s_at:226:351; Interrogation_Position=3093; Antisense; GCAGAGTGCAGAATCCACAGCCAGT
>probe:Drosophila_2:1637815_s_at:553:311; Interrogation_Position=3112; Antisense; GCCAGTAACTCACAGCTAAGCGATT

Paste this into a BLAST search page for me
ACGCTGGTACACTCCATGGTGGCGCATGGTGGCGCATTTAGAGCCGGTCAGATGCTCATGGCCTGTATTTGCTATTGTATTTGCTATCCGGCTCGCACGAACGACTGCTCGATACGGCTGTGGAAGCAGGAGATCACAGCGCATCGCAAGCGAGAGCATATTCGATGTGGCCTTCAAAGCCGTACATTGCTAGTGCCGGGGCCTCGCCAAGGTCTTTGTCTAAAACGAGACGAGACAGACAGACCCACATGGCCGCGTCGGATCGAACGAATTCAATTCGGAATCCAGAGTGCATATGCAGCAGAGTGCAGAATCCACAGCCAGTGCCAGTAACTCACAGCTAAGCGATT

Full Affymetrix probeset data:

Annotations for 1637815_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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