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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637918_s_at:

>probe:Drosophila_2:1637918_s_at:465:207; Interrogation_Position=2268; Antisense; AAGCTCGAGACCATCTGGGAGTCCC
>probe:Drosophila_2:1637918_s_at:275:503; Interrogation_Position=2288; Antisense; GTCCCATGTGGTGCCGCTTGTCAGA
>probe:Drosophila_2:1637918_s_at:674:99; Interrogation_Position=2310; Antisense; AGAGGCACCGAGACCATCATGAGAA
>probe:Drosophila_2:1637918_s_at:421:365; Interrogation_Position=2370; Antisense; GAATACGTCACTGATGTCGCCACGA
>probe:Drosophila_2:1637918_s_at:509:189; Interrogation_Position=2479; Antisense; AACAGTTCATCACATCCACCGAGGT
>probe:Drosophila_2:1637918_s_at:30:133; Interrogation_Position=2496; Antisense; ACCGAGGTCCAGCAGTCCATGGTAA
>probe:Drosophila_2:1637918_s_at:508:657; Interrogation_Position=2518; Antisense; TAACGGAAACGAGCTCCAAGGTTCT
>probe:Drosophila_2:1637918_s_at:543:663; Interrogation_Position=2542; Antisense; TAAAGCTGACCTTTGGCGCGAGGAC
>probe:Drosophila_2:1637918_s_at:106:471; Interrogation_Position=2598; Antisense; GTTCCCACAGCTGTCACTAGATTAA
>probe:Drosophila_2:1637918_s_at:684:147; Interrogation_Position=2613; Antisense; ACTAGATTAATAACCGCCACCATTC
>probe:Drosophila_2:1637918_s_at:119:235; Interrogation_Position=2685; Antisense; AATCCATTCGCCTATGTTGGCTAGT
>probe:Drosophila_2:1637918_s_at:419:697; Interrogation_Position=2711; Antisense; TTTAGGAGCATCTACGCAAGCGAGA
>probe:Drosophila_2:1637918_s_at:560:203; Interrogation_Position=2728; Antisense; AAGCGAGAGTGTCTAACCCCATTAC
>probe:Drosophila_2:1637918_s_at:360:21; Interrogation_Position=2840; Antisense; ATATTGTATGTGCACTTTGTCGCAA

Paste this into a BLAST search page for me
AAGCTCGAGACCATCTGGGAGTCCCGTCCCATGTGGTGCCGCTTGTCAGAAGAGGCACCGAGACCATCATGAGAAGAATACGTCACTGATGTCGCCACGAAACAGTTCATCACATCCACCGAGGTACCGAGGTCCAGCAGTCCATGGTAATAACGGAAACGAGCTCCAAGGTTCTTAAAGCTGACCTTTGGCGCGAGGACGTTCCCACAGCTGTCACTAGATTAAACTAGATTAATAACCGCCACCATTCAATCCATTCGCCTATGTTGGCTAGTTTTAGGAGCATCTACGCAAGCGAGAAAGCGAGAGTGTCTAACCCCATTACATATTGTATGTGCACTTTGTCGCAA

Full Affymetrix probeset data:

Annotations for 1637918_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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