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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637921_a_at:

>probe:Drosophila_2:1637921_a_at:17:181; Interrogation_Position=1010; Antisense; AAACACTGCACCAGCGATTTGTGGT
>probe:Drosophila_2:1637921_a_at:243:611; Interrogation_Position=1034; Antisense; TGACCGCCAAGGATTTCTTCAGTCT
>probe:Drosophila_2:1637921_a_at:518:543; Interrogation_Position=1044; Antisense; GGATTTCTTCAGTCTCAATCTGCAT
>probe:Drosophila_2:1637921_a_at:46:499; Interrogation_Position=1055; Antisense; GTCTCAATCTGCATCTACTGAGTAG
>probe:Drosophila_2:1637921_a_at:49:487; Interrogation_Position=1076; Antisense; GTAGTATGTTTGCAGCTGTGGTCAC
>probe:Drosophila_2:1637921_a_at:448:333; Interrogation_Position=1090; Antisense; GCTGTGGTCACATATCTGGTTATTC
>probe:Drosophila_2:1637921_a_at:459:495; Interrogation_Position=1096; Antisense; GTCACATATCTGGTTATTCTCATAC
>probe:Drosophila_2:1637921_a_at:441:11; Interrogation_Position=1111; Antisense; ATTCTCATACAGTTCATGTTCGCCG
>probe:Drosophila_2:1637921_a_at:619:47; Interrogation_Position=1126; Antisense; ATGTTCGCCGAAAGGAGTTCAACGC
>probe:Drosophila_2:1637921_a_at:432:295; Interrogation_Position=1134; Antisense; CGAAAGGAGTTCAACGCGAGGCAGC
>probe:Drosophila_2:1637921_a_at:187:313; Interrogation_Position=923; Antisense; GCCGGCAAATCGGTTGTCTAATTTC
>probe:Drosophila_2:1637921_a_at:222:297; Interrogation_Position=932; Antisense; TCGGTTGTCTAATTTCGAAGTTGGT
>probe:Drosophila_2:1637921_a_at:550:301; Interrogation_Position=962; Antisense; CCCAGGGCAGCAAACTATACAATGA
>probe:Drosophila_2:1637921_a_at:334:245; Interrogation_Position=998; Antisense; AATTTTCACTTCAAACACTGCACCA

Paste this into a BLAST search page for me
AAACACTGCACCAGCGATTTGTGGTTGACCGCCAAGGATTTCTTCAGTCTGGATTTCTTCAGTCTCAATCTGCATGTCTCAATCTGCATCTACTGAGTAGGTAGTATGTTTGCAGCTGTGGTCACGCTGTGGTCACATATCTGGTTATTCGTCACATATCTGGTTATTCTCATACATTCTCATACAGTTCATGTTCGCCGATGTTCGCCGAAAGGAGTTCAACGCCGAAAGGAGTTCAACGCGAGGCAGCGCCGGCAAATCGGTTGTCTAATTTCTCGGTTGTCTAATTTCGAAGTTGGTCCCAGGGCAGCAAACTATACAATGAAATTTTCACTTCAAACACTGCACCA

Full Affymetrix probeset data:

Annotations for 1637921_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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