Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637939_at:

>probe:Drosophila_2:1637939_at:372:415; Interrogation_Position=1082; Antisense; GAGCTAGTTATGCTGCCGGAGTTCC
>probe:Drosophila_2:1637939_at:74:453; Interrogation_Position=1144; Antisense; GATCATCCATTTGCGTTCATCATTC
>probe:Drosophila_2:1637939_at:509:209; Interrogation_Position=1174; Antisense; AAGCACGCTGTCTATTTCACCGGAC
>probe:Drosophila_2:1637939_at:372:477; Interrogation_Position=1209; Antisense; GTTTTAATCGTCACACATTTCCCTC
>probe:Drosophila_2:1637939_at:725:79; Interrogation_Position=674; Antisense; AGGTGCCAACCATGTTCGCAGACAA
>probe:Drosophila_2:1637939_at:641:69; Interrogation_Position=737; Antisense; AGGCCATTGAGCTGTTCTTCGAAAA
>probe:Drosophila_2:1637939_at:524:207; Interrogation_Position=826; Antisense; AAGCTCAAGGGCGTCGACTTCAATC
>probe:Drosophila_2:1637939_at:531:711; Interrogation_Position=844; Antisense; TTCAATCTGCTCGAAGACCGCTGGC
>probe:Drosophila_2:1637939_at:205:349; Interrogation_Position=867; Antisense; GCAGTGGCAGAGTGTGTCCGTTTAC
>probe:Drosophila_2:1637939_at:208:463; Interrogation_Position=906; Antisense; GTTCGAGTTCGACACGGACCTAAGA
>probe:Drosophila_2:1637939_at:320:413; Interrogation_Position=922; Antisense; GACCTAAGACCCACATTGCATAAGA
>probe:Drosophila_2:1637939_at:175:527; Interrogation_Position=948; Antisense; GGGAATCAGTGCCATGTTCTCAGAT
>probe:Drosophila_2:1637939_at:549:59; Interrogation_Position=961; Antisense; ATGTTCTCAGATGCAGCCGACTTCA
>probe:Drosophila_2:1637939_at:592:401; Interrogation_Position=979; Antisense; GACTTCAGCAACATTTTCCAGGACT

Paste this into a BLAST search page for me
GAGCTAGTTATGCTGCCGGAGTTCCGATCATCCATTTGCGTTCATCATTCAAGCACGCTGTCTATTTCACCGGACGTTTTAATCGTCACACATTTCCCTCAGGTGCCAACCATGTTCGCAGACAAAGGCCATTGAGCTGTTCTTCGAAAAAAGCTCAAGGGCGTCGACTTCAATCTTCAATCTGCTCGAAGACCGCTGGCGCAGTGGCAGAGTGTGTCCGTTTACGTTCGAGTTCGACACGGACCTAAGAGACCTAAGACCCACATTGCATAAGAGGGAATCAGTGCCATGTTCTCAGATATGTTCTCAGATGCAGCCGACTTCAGACTTCAGCAACATTTTCCAGGACT

Full Affymetrix probeset data:

Annotations for 1637939_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime