FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1637977_a_at:

>probe:Drosophila_2:1637977_a_at:668:227; Interrogation_Position=1324; Antisense; AATGGCGGGCAGGAGCATCGCAATA
>probe:Drosophila_2:1637977_a_at:628:155; Interrogation_Position=1358; Antisense; ACAGCCCCAAGTCGAGCAATGGCAA
>probe:Drosophila_2:1637977_a_at:548:321; Interrogation_Position=1404; Antisense; GCGCCAGCAATTGACAGCCGAGGAA
>probe:Drosophila_2:1637977_a_at:151:123; Interrogation_Position=1445; Antisense; AGCGACGCAGGAAGGCTCAGCAGCA
>probe:Drosophila_2:1637977_a_at:647:601; Interrogation_Position=1506; Antisense; TGTTTTCCTGGAAGCGAGTGCGCCC
>probe:Drosophila_2:1637977_a_at:629:633; Interrogation_Position=1587; Antisense; TCGCGTTCCGCGAGTGCCAGAGAAA
>probe:Drosophila_2:1637977_a_at:628:105; Interrogation_Position=1607; Antisense; AGAAATGCGGCCTCCGTCTGCTGGA
>probe:Drosophila_2:1637977_a_at:591:585; Interrogation_Position=1628; Antisense; TGGAACGCTGCAGTTGGCCGCAATG
>probe:Drosophila_2:1637977_a_at:147:729; Interrogation_Position=1641; Antisense; TTGGCCGCAATGCAATCACTCGTGT
>probe:Drosophila_2:1637977_a_at:568:305; Interrogation_Position=1724; Antisense; CCTTTGGCTTGGACATCGAGGCGGT
>probe:Drosophila_2:1637977_a_at:601:319; Interrogation_Position=1753; Antisense; GCCGCTCTGGGAGTCGATATGCACA
>probe:Drosophila_2:1637977_a_at:79:457; Interrogation_Position=1768; Antisense; GATATGCACACGCTCAACAACATGG
>probe:Drosophila_2:1637977_a_at:680:189; Interrogation_Position=1786; Antisense; AACATGGAGCGCACCGAGTTGGTCA
>probe:Drosophila_2:1637977_a_at:256:429; Interrogation_Position=1801; Antisense; GAGTTGGTCAACATGCTCACCCAGC

Paste this into a BLAST search page for me
AATGGCGGGCAGGAGCATCGCAATAACAGCCCCAAGTCGAGCAATGGCAAGCGCCAGCAATTGACAGCCGAGGAAAGCGACGCAGGAAGGCTCAGCAGCATGTTTTCCTGGAAGCGAGTGCGCCCTCGCGTTCCGCGAGTGCCAGAGAAAAGAAATGCGGCCTCCGTCTGCTGGATGGAACGCTGCAGTTGGCCGCAATGTTGGCCGCAATGCAATCACTCGTGTCCTTTGGCTTGGACATCGAGGCGGTGCCGCTCTGGGAGTCGATATGCACAGATATGCACACGCTCAACAACATGGAACATGGAGCGCACCGAGTTGGTCAGAGTTGGTCAACATGCTCACCCAGC

Full Affymetrix probeset data:

Annotations for 1637977_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720